Gossypium hirsutum (upland cotton): 121218575
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Entry
121218575 CDS
T04793
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121218575
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121218575
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
121218575
NCBI-ProteinID:
XP_040951938
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All DBs
Position
D06:59836629..59837774
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AA seq
350 aa
AA seq
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MNVIDKCWRGNPLWRSQRQQLAKCSVGFAGKMINNIGKDVVKYKVTDPSDDPLSPKSGTL
RYGTTMIKQKVWITFKNSMTITLQRPLLLSSFTTIDGRGIDVHITGAGCLLVYQATDIII
HGLRIHHCKAQPPSIVMGPNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYECQDGLLDVT
RGSTNITVSNNWFRNQDKVMLLGHDDGHLRDKNMKVTVIFNHFGPKCNQRMPRVRHGYAH
VANNFYQGWEQYAIGGSMSPSIKSEANFFITPNDVGNKEVTWRKGEKGLWKFYSVGDVFK
NGASFSKQTGVGGAKPNYNQEQNFKVVGAESVKELTSESGVLRCSRSLIC
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaatcgataaatgttggagagggaaccctctttggcgaagtcaacgacaacaa
ttggccaaatgctccgtcggttttgccggcaaaatgatcaacaacattggtaaagacgtc
gtgaaatacaaggttacagatccttctgacgaccctttgagtcctaaatcagggaccctt
cgttatggaaccacaatgatcaaacaaaaagtatggatcacattcaaaaatagcatgacc
atcacactccaaagaccacttcttttaagtagcttcactaccatcgacggtcgtggcatc
gatgtccacataactggcgctggctgcctgttggtgtaccaagcgaccgatataatcatc
catgggcttcgcatccaccattgcaaggcccaaccacctagcattgtgatgggtccaaac
gcgaaggtgatccctttaggccaaatggatggagacgctataagattggtcaccgcaagg
aaagtgtggatcgatcataacacattgtatgagtgccaggacggcctcctcgatgtcact
cgcggttccaccaacatcaccgtgtcgaacaactggttcaggaaccaagacaaagttatg
ctcctcggacacgacgatggtcatttgagagacaaaaacatgaaggtcactgtcattttc
aaccattttggacctaagtgcaaccaaagaatgccaagagttcgccatggatatgcacac
gtagcgaacaatttctaccaagggtgggaacaatacgccattggtggtagcatgagccct
agcatcaagagtgaagccaattttttcatcactcctaatgatgttgggaacaaagaggta
acatggagaaaaggagagaaaggtttatggaaattttattcagtaggggatgtatttaaa
aatggagcatcttttagtaagcaaacaggtgtaggtggagctaagcctaactataaccaa
gaacaaaattttaaagttgtcggtgctgaatctgttaaggaattaacaagtgaatctggt
gttttacggtgctccagaagtttaatatgttga
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