Gossypium hirsutum (upland cotton): 121219257
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Entry
121219257 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121219257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121219257
03036 Chromosome and associated proteins [BR:
ghi03036
]
121219257
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121219257
Coactivators
SAGA/TFTC/STAGA complex
121219257
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121219257
STAGA complex
121219257
TFTC complex
121219257
SAGA complex
121219257
SLIK complex
121219257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_like
WD_LRWD1
Beta-prop_VPS8
Beta-prop_DCAF12
Cytochrom_D1
PALB2_WD40
LisH
PROPPIN
PPR_2
Beta-prop_EDC4L
Pox_F17
Motif
Other DBs
NCBI-GeneID:
121219257
NCBI-ProteinID:
XP_040953036
LinkDB
All DBs
Position
D07:complement(3805057..3811019)
Genome browser
AA seq
668 aa
AA seq
DB search
MENMQAVNSFVAAYLKKKGFKEAEQLLEDLQKKESAPIDFHNDPDLAKFIHHFSQSEDDV
ARYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDLVAKGHLQEARTFFNAFHEDH
ELMHSRDLQKLEGVLSQSHLEEMEFARSLRQNKVNIKICQYSYGLLLQYLHKTQSTAMLG
VINEHIKFQVTSGQPGSISDDTEVVTLIGSCQDAASLINQKEIHWGLLEDSLEDRLEKEG
GLLSDSEKAEAENKEGDVDDSKKRSVEGGKQGASTKKLKKDKAVNATAKSARPEAKPTPA
APRVKPELTLPVMSTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNCSSISQDG
SFVAGGFSDSSLKVWDMAKLGQQAGSSTLQGENDSTSSEHVAGPNGVKRSYTLFEGHSGP
VYSATFSPLGDFIISSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDRTVRLWDVQSGECVRIF
VGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHTSCVWSLAFSCEGTV
LASGSADCTVKLWDVTTSTKAPKNEEKSGNPNRLRSLKTLATKSSPVYSLRFSRRNLLFA
AGVLSKNV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaggctgtgaatagcttcgtggcagcttatttgaagaagaaaggattc
aaagaagcggagcaattgttggaggatcttcagaagaaggagtccgctccaatcgatttc
cacaacgaccctgatcttgctaagttcattcaccacttttcccagtcggaggatgatgtg
gcacggtaccaggatgggtatagcaaactgaggtcgtggacttatagttccctagattta
tacaagcatgagttgcttcgcgtgctttatccagtctttatacattcattcatggatctg
gtggcgaaaggacatttgcaagaggctagaaccttttttaatgcctttcacgaggaccat
gaactgatgcactcacgggaccttcaaaagttggaaggcgttctttcgcagtctcatttg
gaggagatggagttcgctcgttctcttaggcagaataaagttaacatcaagatatgtcag
tattcatatggccttctgctgcaatatttgcataaaacacagtccactgctatgctgggg
gtcatcaatgaacatatcaaattccaagttacttctggacagcctggttcgatttctgat
gatacagaggttgtaacactaattggaagctgccaggatgcagctagtctgataaatcag
aaagaaattcattggggattactagaagactccttagaagatcgtttggagaaggaagga
ggtttgctttcagattctgaaaaggcagaagcagagaacaaagaaggggatgtagatgac
agtaagaaaagatcagtagaaggtggaaagcaaggtgcttcaacaaaaaagttgaaaaag
gacaaagctgttaatgcgacagcaaaaagtgctcgccctgaggctaaacccacccctgct
gcaccacgagtcaagccagagctcactttgcccgtaatgtctacagaggtagaacagtct
atactcgaggacttaagaaaccgtgtacagttgagtagcgttgcattgccatctgtcagc
ttttatacgttcctcaacacgcataatggtttgaactgttcatcaatatcccaggatgga
tcttttgttgctggagggttctcagactcatcactgaaggtttgggatatggcaaagctg
ggccaacaagctggtagttctactttgcagggtgaaaatgattctacttcaagtgaacat
gttgcgggaccaaatggtgtgaaaagatcctatacattgtttgagggtcattcaggacca
gtttattcagccacctttagtcctcttggtgattttattatttcctcttcagcagataca
acaattcgcttgtggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtatgggatgttcagtttagtcctgtaggacactattttgccagctcttcacat
gatcgaacagcaaggatttggtcaatggatagaatacaacctttgagaataatggcagga
cacttgtctgatgttgattgcgtgcaatggcatgccaactgcaactatattgccacaggc
tctagtgacagaacggtaagattgtgggatgtacaaagtggagaatgtgttcggattttc
gttggtcataggagtatgatattgtcactagcaatgtcacctgacggccgctatatggct
tctggtgatgaagatggcacaatcatgatgtgggacctttcaagtggacggtgtgttacg
cctttgatgggtcacacctcttgcgtatggtcacttgctttcagttgtgaaggtacggtt
ctagcatctggatcagctgattgcactgtaaaattgtgggatgtcacaacaagcacaaag
gccccgaaaaacgaagaaaagagtggaaatcccaacagactgagatcgttgaaaaccttg
gcaaccaagtctagtccagtgtatagtttgcggttttcgaggaggaatctgctgtttgcg
gctggggtgctctctaagaatgtctaa
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integrated database retrieval system
