Gossypium hirsutum (upland cotton): 121219362
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Entry
121219362 CDS
T04793
Name
(RefSeq) DNA repair protein RAD4-like
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121219362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121219362
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121219362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
121219362
NCBI-ProteinID:
XP_040953340
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Position
D07:10170503..10175530
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AA seq
983 aa
AA seq
DB search
MRNRDKSKSQTQSSGTLARKSQEGVNKFLRRSSRLSSSGKKEQDGFSLENDLKTNDQEVV
HTMDVCNASTVEGCHRDAIENSQAKEQEVVHSMDVCNASTVEDCHRDAIENSQAKEQEVV
HSMDAHNASPGDDCHKDTLLDDSEEMNDSDWEDGPILKSDPVDRSPNERMKGLTIEFDEP
SGSTGGRKPVRRASAEDKELAELVHKVHLLCLLARGRLIDNACDDSLIQASLLSLLPTHL
LKISEVSNITANALTPLVTWFHDNFHVRNLARAERSFRTALATALETHEGTPEEIAALSV
ALFRALKFTARFVSILDVTSLKPKADTYEPSNQVAERVSGGIFSTSTLMVDNLKRASIAP
SPVQTSPCNEKDDHGISSRKSKGGCSTSNVAQSRDSTSFKESTDGKSTCQVQPDTSRQCV
PKNSQGLKRKGDLEFEMQLAMAISATSVETHENIHDSSDGNNSLEASIPMKRWKRIERVE
SASCFQGFSTALGSRKVGSPLFWAEVYCDGENLTGKWVHVDAVNAIIDGEQKVEDAAAAC
KTSLRYVVAFAGHGAKDVTRRYCMKWYKIAPKRVNSTWWDSVLAPLRQLESGGMGGTIKV
SEHPGENSSLDRVILPEKSGQEASKEYGSKIEVESSVKGSFVATRNSLEDMELETRALTE
PLPTNQQAYKNHALYALERWLTKYQILHPKGPILGFCSGHPVYPRSCVQTLKTRERWLRE
GLQIKGTETPVKVLEQSTKLKKARVSEDVCDEIDSKETIELYGKWQLEPLLLPRAVNGIV
PKNERGQVDVWSEKCLPPGTVHIRLPRVFVVAKRLEIDYAPAMVGFEFRNGRAVPVYDGI
VVCTEFKDAILEAYAEEEERRAAEEKKQTEAQAISRWYQLLSSVITRQKLNSYYRGSSSS
QPSRNIQDKNIETKTPVQSSKDNKQPTAHRKANNQDTTHTTSLVALEVGHEHVFLTKNES
FDAENSIRTKRCECGFSIQVEEL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacagagacaagtctaaaagccaaacccaatcttctggaacacttgctaggaaa
tcacaggagggagtgaacaaatttctaagacgatccagtagactcagctcttcagggaag
aaggaacaagatggattttccctggaaaacgatctaaaaacaaatgatcaagaagttgta
catacaatggatgtgtgcaatgcttcaacggttgaaggttgtcatagagatgccatagaa
aattctcaagcaaaggaacaagaagttgtacattcaatggatgtgtgcaatgcttcaacg
gttgaagattgtcatagagatgccatagaaaattctcaagcaaaggaacaagaagttgta
cattcaatggatgcacacaatgcttcaccgggtgatgattgtcataaagatactcttctc
gatgatagtgaagaaatgaatgattcagattgggaagatggtccgattcttaaatcagat
cctgtagaccgttctccaaatgaacggatgaaggggttaactattgaatttgatgaacca
tcaggttcaactggaggacggaagcctgttcgtcgagcatctgctgaagacaaggaattg
gctgaacttgtccataaggttcatttgctttgtttacttgcgaggggcagattaatagac
aatgcctgtgatgattctcttattcaggcttctttactttctcttctacctacacactta
ttgaagatatcggaagtctcgaatatcactgcaaacgctttgactcctctcgttacttgg
ttccatgataactttcatgtgaggaacttagctcgtgcggaaagatcatttcgtactgct
ttggctacagctcttgaaactcatgagggaactccagaagagattgcagctttatcggtg
gcattatttagagctttgaagtttacggcacggtttgtgtccattttggatgttacctcc
ttaaaacccaaggctgatacatatgaaccttcaaaccaagtggcagaaagagtgagtgga
gggatattcagtacttcaacactaatggtggataacctaaaaagagcttctattgctcca
tctccagttcaaacatccccatgcaacgagaaagatgatcatggcataagttcacgcaaa
agtaaaggtggctgctcaacgagcaacgttgctcaatccagggactctacttcttttaaa
gaatcgactgatggaaaatcaacctgtcaggtgcaaccggatacatctcgacaatgtgtt
cctaaaaattctcaaggcttgaagaggaaaggggatctcgagtttgagatgcagttggca
atggctatttctgctactagtgttgagactcatgaaaacattcacgactcatccgatggt
aataactcattagaagcatctattcctatgaaaagatggaaaaggatcgaaagagtagaa
tctgcttcttgtttccaaggattttctactgcacttgggtcaagaaaagtaggatcacca
ttgttttgggcagaagtgtactgtgatggggagaacttgaccgggaaatgggtgcatgtt
gatgctgtgaatgcgattatagatggagaacagaaagtagaagacgcagctgctgcatgc
aaaacatcgttgagatatgtagttgcttttgcaggtcatggtgctaaagatgtgacccgc
aggtattgcatgaagtggtacaaaatagcaccgaaacgagttaattcaacttggtgggat
tccgtattagcacctttgaggcagttagagtcaggaggaatggggggtacgattaaagta
tctgaacatccaggtgaaaatagtagtttggaccgtgttatcttacccgagaagtcgggt
caagaagcttccaaagagtatggtagtaagatcgaagttgaatcttctgtgaagggctct
tttgttgccaccaggaactctcttgaagatatggaactggaaactcgggcattaaccgag
ccccttcccactaatcagcaggcctataaaaaccatgcattgtatgcacttgaaaggtgg
cttacaaagtatcagattttacatccaaaaggtccaattctcggtttctgctccggtcat
ccggtatatcctcgctcttgtgtgcaaactctcaagacacgagaaagatggttgcgcgaa
ggactgcagatcaaaggcaccgagactcccgtaaaggtattggaacaatctacaaaacta
aagaaagctcgagtttccgaagatgtttgtgatgaaattgattctaaagaaactattgaa
ctttacgggaagtggcagctcgagccacttcttctccctcgtgctgttaatggaattgtg
ccaaagaacgagcgtggacaagttgatgtatggtccgagaagtgccttccaccagggact
gttcacataaggttgccaagggtatttgttgttgccaagaggctggaaattgattatgca
ccggctatggttggtttcgagtttagaaatggtcgtgctgttcccgtctatgatggaatt
gtggtctgtacagagttcaaggatgcaatattagaggcctatgccgaagaagaagaaaga
agagcggccgaagagaagaaacaaaccgaagcacaagctatctcaagatggtatcaactt
ctctcatcagtcataaccagacaaaagttgaacagctattaccgaggcagttcgtcatca
caaccatccagaaacatccaagataaaaatattgagaccaaaactccagttcaaagcagc
aaggacaataagcaacctacagcccatcggaaagcaaataaccaagataccacgcatacc
acttcattggtagcactagaggtaggccacgaacacgtctttttaaccaaaaacgaaagt
ttcgacgcagagaactcaattcgaacaaagcgatgcgagtgtggattttctatccaggtg
gaagaattatag
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