Gossypium hirsutum (upland cotton): 121219595
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Entry
121219595 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121219595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
121219595
03009 Ribosome biogenesis [BR:
ghi03009
]
121219595
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121219595
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
121219595
Complex B
121219595
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
121219595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121219595
NCBI-ProteinID:
XP_040953954
LinkDB
All DBs
Position
D07:57813507..57818708
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AA seq
655 aa
AA seq
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MASTATASSAGPRYAAPDPTLPKPWKGLVDGKTGYLYFWNPVTNVTQYERPTSADSVPKP
SVAPISSSVQVQQSSEGRCGYSPGKENDRDGRGSEAKLEPVSRTDQNARSGPVHSHNTPN
VTSSSVSGVSSARGHGSVTGGSNLSGDAYRRQHEITVTGDEVPPPFSSFESTGFPSELLR
EVHNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLVPGFMHIKRCGNDSQMGP
TVLVLSPTRELATQIQDEAQKFGGSSRITCTCLYGGAPKGPQLREIERGVDIVVATPGRL
NDILEMRRVSLQQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPREVRK
IAADLLVNPVQVNIGNIDELVANKSITQNVEVLAPMVKHRRLEQILRSQEPGSKIIVFCS
TKKMCDQLARNLSQFGAASIHGDKSQADRDYVLGQFRSGRSPVLVATDVAARGLDIKDIR
VVINYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGDQDSKHASDLIKVLEGANQQVPAEL
REMASRGGGMGRPRRWAPSSGGYDGERGGRTDSGYGGRDGGRGSRGISTSSSWHEKSGGR
GYGHESSDRNDRGFHDSYDTGRSRSRSPDRFNSASGRDHSPVLSFHELMMKRNQQ
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactgcaactgcctcttctgctggtccccgttatgctgcgccagaccccact
ctacccaaaccatggaaaggcctagttgatggtaaaactggttatctatacttttggaat
cctgtaacaaatgtcacgcagtatgagaggcctacaagtgcagattctgtcccgaaacct
tctgttgcacctataagttcttcagttcaagttcagcaatcttctgaaggacgttgtggt
tatagtcctggcaaagaaaatgaccgggatggaagaggaagtgaagccaaacttgagcca
gtatcaaggactgaccagaatgctagaagtggaccagttcattcccataatacgcctaat
gtgacttccagctctgtgtcgggagtatcttctgctagaggacatggatcagtgactggg
ggaagtaatttgtctggtgatgcttatcgccgtcagcatgagataacagtaactggagat
gaggtgcccccacctttttcatcatttgaatctactggatttccttctgagttacttaga
gaggtacacaatgctgggttttctgctccaactccaattcaggctcaatcatggccaatt
gcattgcaaggtagagacatagtggccattgcaaaaaccggttctgggaaaacattgggt
tacctagtacctgggtttatgcatatcaagcggtgcggtaatgattctcaaatgggtcca
actgtgttagtattatcaccaacaagggagctggctactcagatacaagatgaagctcag
aagtttggtggttcatcaagaattacgtgcacatgtctgtatgggggagcaccaaaaggt
cctcagttgagagaaattgagagaggagtagatattgtggttgccactcctggccggtta
aatgatattctagagatgaggagagtcagcctccagcaagtttcttacctcgtgttagat
gaggctgatcgcatgttagatatgggttttgaacctcagattaggaagattgtgaaagag
gtgcctactcgtaggcagactctcatgtacacagcgacatggccaagggaagttcggaaa
attgcagcagatctactggtaaatcctgttcaggtcaacattggcaatatcgatgagctt
gtggcaaacaagtctattacacagaatgtcgaagtattagcaccaatggtaaaacacaga
agacttgagcagattctgcgctctcaagaaccaggatccaagattatagtcttttgttca
accaagaagatgtgtgatcaacttgctcgcaacctcagtcagtttggagctgcttctatc
catggtgacaaatctcaggctgacagggactacgtgcttggtcagtttcgctctgggagg
tcgccagtgcttgttgctactgatgttgctgctcggggcctagacattaaggacatcagg
gtggtaatcaactatgacttccctactggagttgaggattatgttcataggattggaagg
actggaagggcaggtgcaactggattggcttttacattctttggtgatcaggattcgaag
catgcttcagatctcatcaaagttttagaaggagcaaaccagcaggtgcctgcagaactt
cgtgaaatggcttcacgtggtggtgggatgggaaggcctagacgatgggctcctagttct
ggtggctatgatggtgaacgtggcggacgcactgattcagggtatggtggtagggatggt
ggaagaggaagtcgaggaatttctacatcctcgagctggcatgagaaaagtggtggacgt
ggatatggtcacgagtcttctgacaggaatgatcgtggtttccatgatagttatgatacg
ggacgcagtcggagtcggagtcctgacaggtttaatagtgcttctggacgtgatcattcc
ccagtgctcagtttccacgagctgatgatgaaacgtaatcagcagtag
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