Gossypium hirsutum (upland cotton): 121219915
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Entry
121219915 CDS
T04793
Name
(RefSeq) pre-mRNA-splicing factor 18-like
KO
K12817
pre-mRNA-splicing factor 18
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121219915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
121219915
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
121219915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prp18
PRP4
Miga
Motif
Other DBs
NCBI-GeneID:
121219915
NCBI-ProteinID:
XP_040954605
LinkDB
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Position
D08:61679792..61682479
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AA seq
415 aa
AA seq
DB search
MDLLKEELLKKRQSLAQETGGRRVFKRSEIEQKQIQKLREQEKRELEAKSRRQSNASSSA
ANDASAKSNPSASSTVSATATSAAGSSKSLTDERNIDDLDLPKQEVIRRLRFLKQPVTLF
GEDDAARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKTGIVSERKRKDREE
GGGGEDGDGGGGEEELSGDGGSSGVDMDKDLKRMKANFDELCGEDKILVFFKRLLNEWNQ
ELDEMGEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALLVVVECCMKRD
YLAAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRL
MTFCQRRYPTLPSKAVEFNSLANGSDLQSLLAEEKFSGGNSSEERHRLMPAPKEN
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctcaaagaagagcttctcaagaagcggcaaagcttagctcaggaaaccggc
ggcaggcgcgtatttaaacgctccgagattgagcagaagcaaatccagaagcttcgcgag
caagaaaaacgcgaactcgaagctaaatctcgccgtcaatcgaacgcctcttcctccgct
gcgaacgacgcttccgctaaatccaatccttccgcttccagtactgtctccgcgaccgcg
acttccgccgccggttcttccaaatccctcaccgatgaacgaaatatcgatgacctcgac
cttccgaagcaagaagtcattcgccgacttcggttcctcaaacagcctgtcactcttttt
ggggaagacgatgcggctcgtctcgacaggttgaagtacgtcttaaaagctggacttttc
gaagtcgatagcgatatgaccgagggtcaaactaatgatttcttgagagacatagcggag
ttgcggaagcggcagaagacggggatcgtgagcgagaggaagaggaaggatagggaggaa
ggtggtggaggagaggacggggatggaggcggcggagaagaagagctgagtggtgatggt
ggatcaagcggagtcgatatggacaaggacttgaaaagaatgaaggcgaatttcgatgag
ttgtgtggtgaagataagattctggtgtttttcaagaggttgttgaatgagtggaatcaa
gagctggatgagatgggcgaggctgagaaaaggacggcgaaaggcaagtccatggtcgcc
acgtttaagcagtgcgctcgttatttgaatcccttgttcaagttttgtaggaagaaggtt
cttcccgatgatatccgtcaagcattattggtggtggttgagtgttgcatgaagcgggac
tacctagccgcaatggaccagtacattaaattggctatcggtaatgcaccctggccaatt
ggtgtcactatggttggtatccacgaacgttcagctcgtgagaagatctacaccaacagt
gttgcacacataatgaatgacgagacaactcggaaatacttgcaatcaatcaaaagattg
atgaccttttgtcaacgccgttaccctacactcccatctaaagcagtcgagttcaacagc
ttggccaacggtagtgacttacagtcactgctcgcagaagagaagttttctgggggtaat
tcttcagaggaaaggcataggttaatgcctgctccaaaggaaaactag
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