Gossypium hirsutum (upland cotton): 121220114
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Entry
121220114 CDS
T04793
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121220114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121220114
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121220114
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_At1g61320_AtMIF1
LRR_8
Preseq_ALAS
Motif
Other DBs
NCBI-GeneID:
121220114
NCBI-ProteinID:
XP_040955236
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Position
D08:45715132..45718491
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AA seq
586 aa
AA seq
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MQKKTAYSFPDEILEHVFSFIQSVKDRNAASLVCKSWYEIERWCRRKIFVGNCYAVSPTM
VIRRFPDIRSIELKGKPHFADFNLVPDGWGGYVLPWISKMAGAYPWLEEIRLKRMVVTDE
SLELVAKSFTNLQVLVLFSCEGFSTDGLAAIAAGCKNLRELDLRDSEVDDLSGHWLNHFP
DTYTSLVSLNISCLGSDDVSFSALERLVGRCPNLRRLLLNREVPLDKIANLLSRAPQLIE
FGTGTYAAELRSDVYSNLAEAFCNCKELKSLSGFWDAVPAYLPVIYSVCSRLTSLNLSYA
PIQNPDLTKLVSQCPSLQRMLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFGEEPNVSL
TEKGLVAVSSGCPKLQSVLYFCRQMSNAALVTIAQNCPNFTRFRLCLLDPKIADYRTLQP
LDVGFGAIVEHCKDLRRLSLSGLLTDCVFEYIGMHAKKLEMLSVAFAGESDLALHHVLSG
CESLRKLEIMNCPFGDKALLANAAKLETMRSLWMSSCSVSLGACKMLGQKMPRLNIEVMD
EKGPPDSRAESDPVDKLYIYRSVAGPRFDMPPFVWTMDEDFASELS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagaaaacggcgtattcgttccccgacgagattttggagcacgttttctcgttc
atacaatcggtcaaggaccggaacgcagcgtcgttggtgtgcaaatcgtggtacgagatc
gaacggtggtgtcggaggaagatattcgtggggaactgttacgccgtcagccctacgatg
gtgatcaggcggttcccggatatcagatccattgagctaaaagggaagccacacttcgcg
gacttcaatctggtaccggacggttggggcgggtacgtacttccatggatatcgaaaatg
gctggagcctatccatggctcgaagagatccggcttaagcgaatggttgtcacggacgag
agcctggagcttgttgctaagtcgtttacgaatttgcaagtgttggtgctcttttcttgt
gaagggttttcaactgatgggctcgctgctattgctgctggctgcaagaatctgagagag
ctggacttgagagacagtgaagtggatgatttgagtgggcattggctcaaccattttcct
gacacatacacatcccttgtgtctctcaacatttcctgcttaggatccgatgacgttagt
ttctcggccttggagcgcctagttggtagatgtcccaacttgaggaggcttttgctcaac
cgtgaagtgcccctcgataagattgccaaccttttatcccgtgcaccgcagctgattgaa
tttggcactggcacctatgcagctgagctacggtcagacgtgtactcgaacttggctgaa
gctttttgtaattgcaaggaattaaagagcttgtccgggttttgggatgcagtcccagct
taccttccagttatttactctgtatgctccagattaacatcattgaacttaagctacgct
cccatacaaaatcccgatcttaccaagcttgtaagccaatgtccgagtttgcaacgcatg
ttggtacttgattacattgaagatagtggactcgaagtgctcgcatctagttgcaaggac
ctacaggaattgcgggtgtttccatctgatccatttggggaagagccaaatgtatccttg
acagaaaagggccttgtcgctgtttcttcgggttgtcctaagctacagtcggttttgtac
ttttgccgtcaaatgtctaatgcagctttagtcaccattgctcagaactgtccgaacttc
actcgttttcgtctttgtcttcttgatccaaaaatagccgactaccggacccttcagcca
cttgatgtaggttttggagccattgttgagcactgcaaggatctgagacgcctttccctc
tctggtctcctcacagattgtgtgtttgaatatatcgggatgcatgcgaaaaagctagag
atgctgtctgtggcttttgcaggagaaagcgatttggcacttcatcatgtgctttctggg
tgtgaaagtctccggaaactggagattatgaactgccccttcggggacaaggctctatta
gcgaacgctgcaaagctggagacaatgcgatccctttggatgtcttcttgctctgtgagt
ctcggagcatgtaagatgctaggtcaaaagatgcccaggttgaatatcgaagttatggac
gagaagggacctccagattcaagagcagaaagtgacccggtcgataagctctacatatat
agatctgttgccgggccgaggttcgatatgcctccatttgtttggacgatggacgaagat
tttgcatcagagctctcttga
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