Gossypium hirsutum (upland cotton): 121222293
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Entry
121222293 CDS
T04793
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
121222293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121222293
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121222293
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
121222293
NCBI-ProteinID:
XP_040958634
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Position
D10:1928227..1932802
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AA seq
586 aa
AA seq
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MEPSELKRSKDSPNSDESTRRSSFPDEVLERVLSLLKSHRDRSSVSLVCKDWYNAERWSR
THVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPENWGADIHAWLVVFAAKYP
FLEELRLKRMAISDESLEFLAVSFPNFKALSLLSCDGFSTNGLAAIATHCKNLTELDIQE
NGIDDKGGSWLSCFPESFTSLEVLNFANLSSDINFDALERLVGRCKSMRVLKLNRSVSLE
QLQRLLVNAPQLAELGTGSFSEELTFRQYVELESALSNCQNMHTLYGLWDAKGIYLPALY
PVCTHLTFLNLSYAALRSDELAKLLAHCPRLKRLWVLDTVEDKGLEAVGLNCPLLEELRV
FPADPFDEEIIHGVTEAGFVAVSFGCPRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLC
IMNPGQPDYITNEPMDEAFGAVVKTCTKLQRLSVSGRLTDLTFEYIGRYAKNLETLSVAF
AGSSDWGMQCVMGGCSKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRL
LAREMPRLNVEVMKEDGSDDSQADKVYVYRSIAGPRRDAPPSVLTL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaaccatcggagctgaagaggtcgaaggactcgccgaactcggacgagtcaactcgt
cgatcgtcatttcccgacgaagtgctggagcgagttctctcccttttgaaatcccacagg
gaccggagctccgtttctttggtttgcaaggactggtacaacgcggaacggtggtcgagg
actcacgtcttcatcggaaactgttactccgtttcgccggagatcgtcgcgcggcggttc
ccgaagataaggagcgtgacgttgaaggggaaacctaggttttctgacttcaacttggtg
ccggaaaattggggagccgatatccacgcgtggctggtcgttttcgcggccaagtatccg
ttcctcgaagagcttaggcttaagcgaatggcgatcagcgatgaaagcttggagtttctc
gccgtttctttccctaactttaaagctctttcccttttaagctgtgacggttttagcact
aacggacttgccgccattgccactcactgcaagaacttgactgagcttgacatacaggag
aatggcattgatgataaagggggtagttggttgagctgcttcccggaaagcttcacatca
ttggaagtgctcaactttgccaacttgagtagcgatattaatttcgatgctcttgagagg
cttgtaggtaggtgcaagtcaatgagggttttgaagttgaataggagcgtatcgttggaa
cagttacaaagacttcttgttaatgcccctcaattagctgagctcggtacgggctcgttc
tcggaagaacttactttccgccaatatgtagagcttgaaagtgcgttaagtaattgccag
aatatgcatacgctatacggtttgtgggatgccaagggaatatatctccctgccttgtat
cctgtgtgcacgcatctaacgttcttgaacttgagctatgctgctttgagaagcgatgaa
ctggctaaacttctggctcattgtccacgacttaaacgcctctgggtcttggacacggta
gaagacaagggactggaggctgttggactgaactgccccttgcttgaggaactacgagtt
ttccctgctgatccgtttgacgaggaaattatccatggagtcactgaagctgggtttgtg
gctgtgtcttttggttgcccgagactccactatgttctctatttttgtcgtcaaatgact
aatgctgctgtagcaaccattgtacagaactgccctgattttactcatttccgattatgc
ataatgaacccgggtcaaccagattatatcacaaatgaacctatggatgaagcttttggt
gctgtggttaagacgtgcactaaacttcagaggctttcagtttcaggtcgcttaactgat
ctgacattcgagtatatcggtaggtatgctaagaacttggagaccctctcagtggcattt
gcaggcagcagtgactgggggatgcagtgtgttatgggaggttgttcaaaactaaggaaa
cttgagatacgagactgcccgttcggaaatgctgcactgctgtcaggtttggagaagtac
gaatctatgaggtcactttggatgtcggcctgcaatgtgacaatgaatggttgtaggcta
ttggcaagggagatgcctaggttgaacgttgaggtaatgaaggaggatggaagtgatgat
agtcaagctgataaagtctatgtttatcgttcgattgctggcccacggagggatgcccca
ccatctgttcttaccctctga
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