Gossypium hirsutum (upland cotton): 121222400
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Entry
121222400 CDS
T04793
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00900
Terpenoid backbone biosynthesis
ghi01100
Metabolic pathways
ghi01110
Biosynthesis of secondary metabolites
Module
ghi_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
121222400
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ghi01006
]
121222400
Enzymes [BR:
ghi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
121222400
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
121222400
2.5.1.29 geranylgeranyl diphosphate synthase
121222400
Prenyltransferases [BR:
ghi01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
121222400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
121222400
NCBI-ProteinID:
XP_040959064
LinkDB
All DBs
Position
D10:12646300..12647507
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AA seq
305 aa
AA seq
DB search
MKEDQDPQLPSFDFKSFMVDKVNAVNQALDSAVPLRDPVKIHEAMRYSLLAGGKRVRPVL
CLAACDLVGGKESMVMPAACALEMIHTMSLVHDDLPCMDNDDLRRGKPTNHKVYGEDIAV
LAGDALLAFSFEHIAVSTVGVTPDRIVRAIGELAKSIGAEGLAAGQVVDITSEGLTNVGL
DHLEFIHVHKTAPLLEAAAVLGAILGGGHDEDVEKLRKFARNIGLLFQVVDDILDVTKSS
KELGKTAGKDLVADKVTYPKSMGINKSKEFAEKLKSDALELLQGFDPEKSTPLIALANYI
AYRQN
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaccaagaccctcaattaccaagttttgatttcaaatcattcatggtagac
aaggttaatgcagttaaccaagccctggactcggctgttccactccgtgaccctgttaaa
attcatgaagcaatgcgttactcccttttagccggtggcaaaagggtccgcccagttctt
tgtttggctgcttgtgaccttgttggtggcaaagaatccatggttatgccagcagcttgt
gctcttgaaatgatccacaccatgtctttagtccacgatgatcttccttgcatggacaac
gatgatcttcgtagagggaaaccaactaaccacaaagtttatggtgaagatatagctgtg
ttagcaggggatgctcttttagccttttcgtttgaacatatagctgtatccacagttggt
gtcacacctgataggattgtaagagcaattggggaattagctaaatctattggggctgaa
gggttggcggctggtcaagttgtggatataaccagtgagggtctaaccaatgtggggttg
gatcatttagaattcattcatgttcataaaactgctccattgcttgaagcagctgcggtt
ttaggggctattcttggaggtggacatgatgaagatgtggaaaagttgaggaaatttgca
aggaatattgggcttttatttcaagttgtggatgatattcttgatgtaacaaagtcatct
aaagaattagggaagactgcagggaaagatttggtggctgataaagtgacttatcctaaa
tcgatggggataaacaaatcaaaggagtttgcagagaagttgaagagtgatgcattagag
ttgcttcaagggtttgatcctgagaaatctacccccttaattgctttagctaattatata
gcttacaggcaaaattag
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