Gossypium hirsutum (upland cotton): 121225310
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Entry
121225310 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121225310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121225310
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121225310
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
121225310
NCBI-ProteinID:
XP_040965502
UniProt:
A0ABM3BEL7
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Position
D13:complement(63046284..63054816)
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AA seq
320 aa
AA seq
DB search
MQTGNLPQSLSMNSPFGGPSASNPTAAGAPANKDRKMATAEHLVLDLSNPDLRENALLEL
SKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH
PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEI
IPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQ
PSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDQTTRRWLQQLLHNV
GVNRVPTLQAGAGFDHMLVN
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgggaaatctgccacaatctctctcgatgaattcgccttttggaggaccgagc
gcgtcgaatccaactgctgccggagctccggcgaataaggatcggaaaatggcaacggct
gagcatttagttctcgatctcagcaaccctgatctccgagaaaacgctcttctggaacta
tcgaagagagaattatttcaagatttggctccattgttgtggaattcttttggtactatt
gctgcacttttacaggagatagtttcaatttatcctgttctctcaccaccaaatctgact
ccagctcaatcaaatcgagtttgtaatgctcttgctctgcttcagtgtgtagcttctcat
ccagacacaaggatgttattcctgaatgctcatatacccttatatctgtatcctttcctt
aatacgaccagtaagtcaaggccgtttgagtatttgaggcttactagcttaggtgtcatt
ggtgccttggtgaaggttgatgatactgaagttatcagcttcctcctgtccactgagata
atcccattatgtctgcgcacaatggagatgggcagtgaactgtcgaaaacagttgctacc
tttatagttcagaagattctactagatgatgttggcttggactatatttgcaccactgca
gagcggttttttgcagttggtcgagttctgggtaatatggttgcagcacttgctgagcag
ccctcttcgcgactactgaaacatattattcgatgttatcttcgtttgtcagataaccca
agggcttgtgatgcattaagaagttgccttccggatatgctacgagatgccacctttagc
agttgtcttcgtgaggatcaaaccactaggagatggctgcagcagttgcttcacaatgtt
ggagtgaatcgagtgccaacgcttcaggccggtgcaggattcgatcacatgctggttaac
tga
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