KEGG   Gossypium hirsutum (upland cotton): 121226467
Entry
121226467         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04120  Ubiquitin mediated proteolysis
ghi04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121226467
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    121226467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    121226467
Enzymes [BR:ghi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121226467
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121226467
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121226467
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_EML Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_DCAF4 EIF3I Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_like Beta-prop_TEP1_C NBCH_WD40 Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_SPT8 YNR034W-A-like Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 121226467
NCBI-ProteinID: XP_040966298
LinkDB
Position
Unknown
AA seq 404 aa
MVQNPPIYASISISFEWAMNDFSSGFHPPAVPGHETKLSAEEKQPAARCEWDFSLATVVS
STAKATVSDTLGVIEFDPSNTILATGGIARKIRIYTLNSLLRPQEETVHFQGEHQSIAFL
DHTNACGNCIFTPAKLSSLRWKPGTGGRILGSGDYDGVVMEYDVETKVPIFERDEHGGRR
VWSVDYSHSDPFLGASGSDDGTMQMWDPRCGEVGGSVAKVQPTKSRSSVCCVEFNPFGDA
LIAAGCADQKAYAYDVRKMVEPVHIFDGHTKTITYVRFLNAQTLVSAGTDGCLKLWNIVD
SRLLRTYKGHVNSRSFVGLSVWRHGGLLGCGSENNQVFVYDTRWGEPIWVHGFEPMGRDS
SDHHHAFVSSVCWRQVNEDQCTLVAGGSNGVLHVFVGKRKSDSE
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggttcaaaaccctcccatatatgcctccatctccatttcatttgaatgggcaatgaac
gatttctcctccggattccatccccccgccgtcccaggccatgaaaccaaactatccgca
gaagaaaaacaaccagccgcccgttgtgagtgggatttttcactcgccaccgttgtctcc
tccaccgccaaagccaccgtctctgacacccttggagtcatcgaattcgacccttctaat
accatcttagcaaccggagggattgcaaggaagattaggatttacactttgaattctttg
ttgcggcctcaagaagagactgtccattttcaaggtgagcaccaaagtattgcgtttcta
gaccatactaatgcgtgtggtaattgcatctttaccccagctaagcttagtagccttagg
tggaaacccgggaccggaggccgcatcttgggttccggagactacgacggtgtggtcatg
gagtatgatgtagagacgaaggtgccaatcttcgaacgtgacgagcatggtgggaggcgg
gtttggagcgtcgactattctcattcggatccgttcctcggggcatccggctcggacgat
ggcaccatgcaaatgtgggacccacgctgcggcgaagtagggggaagtgtggctaaggtg
cagcccacgaagtcacgcagctcggtttgttgcgtggagttcaaccccttcggagatgca
ttgatagctgccggatgcgccgaccagaaggcctacgcctatgatgtacggaaaatggtg
gaacctgtacacattttcgatggacatacgaaaaccataacatacgttagatttctgaat
gcccaaacactggtttccgctggaaccgacgggtgtttaaaactatggaatatcgttgat
tctcgtttacttagaacatacaaagggcacgtaaacagtcggagttttgtggggttgtca
gtgtggaggcatggagggttgcttggatgcggatcagaaaataaccaggtgttcgtttat
gataccaggtggggtgagcccatttgggtgcatggcttcgagcctatgggtagagatagc
tccgatcatcaccatgctttcgtcagcagtgtgtgctggaggcaagtcaatgaagaccag
tgcacacttgttgcaggtggttccaatggagttttacacgttttcgtgggcaagaggaaa
tctgattcagagtag

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