Gossypium hirsutum (upland cotton): 121228179
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Entry
121228179 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121228179
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
121228179
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Nab2-zf4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121228179
NCBI-ProteinID:
XP_040967367
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Position
A04:complement(78970930..78973074)
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AA seq
391 aa
AA seq
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MATLPHLFLLLILFLSFNSSLAALLNLNVLTFGAKPDGTTDSTNAFLSAWTRACASTNLA
TIYVPKGRFLLRSINFRGKCNNNDISFRIDGTLVAPVDYRIIGKADNWISFQYVDGVSIY
GGKLDAKGTGLWACKNSGKACPSGATTLSFSNSKNVVVDRLTSLNSQMFHIVINGCHNVK
MQGVTVIASGNSPNTDGIHVQLSSGVTILNSNIQTGDDCISIGPGATNLWIEKITCGPGH
GISIGSLGKDQNEAGVQNVTVKTAKFMGTQNGVRIKSWARPSSGFARNIVFQHIVMKNVE
NPIVIDQNYCPGNKNCPDQVSGVKVSNVRYQDIHGTSATQVAVKFDCSAKHPCSGIRLEE
VKLTYKNEVAEASCKHAAGTISGAVQPTSCL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggccactcttccacatcttttcctactactgattctcttcctctcctttaactcatcc
ttagctgcactgctcaatctcaacgtcttgactttcggtgccaaacccgacggcactacc
gactccaccaatgccttcctatctgcatggacccgggcttgtgcctccaccaaccttgcc
accatctacgtaccgaaagggaggtttttgttgcggagtatcaactttcgtggcaaatgc
aacaacaacgatatctcgtttcgaatcgacggtaccctcgtggctcccgtggattatcgg
atcattggaaaggccgataactggatttcctttcagtatgttgatggtgtttccatttat
ggtggaaaacttgatgccaagggtactggcttgtgggcttgtaagaattccggcaaggct
tgccccagtggtgccacgacattaagctttagcaattccaagaacgtggtcgtcgacaga
ttaacatcactaaacagccagatgttccacatcgtaatcaacggctgccacaatgtgaaa
atgcaaggagtgaccgtcattgcttccggtaacagccccaacactgacggtattcacgta
caactatcgagcggcgtcaccatcctcaactccaatattcaaaccggtgacgattgcatc
tcgattggccccggtgcaactaatctctggatcgagaagataacatgtggccctggtcac
ggtatcagcattgggagtttggggaaggaccaaaatgaagcaggagtgcagaatgtgacg
gtgaaaacagccaaattcatgggtacccaaaatggggtgaggataaagtcatgggcaaga
cccagcagtggttttgcgcggaatattgtattccaacatatcgttatgaagaatgttgaa
aaccccattgtgattgaccaaaactactgccctggcaacaaaaattgtcctgatcaggta
tcgggagttaaggtaagtaatgtaagataccaggacatacatggaacatcggcgacacaa
gttgcagtgaaattcgattgcagtgctaaacatccatgcagtgggatacgattggaagag
gtgaaacttacgtataagaatgaggtagctgaagcttcatgcaaacatgctgctgggact
atttcgggtgctgttcagcccacaagttgtttgtag
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