Gossypium hirsutum (upland cotton): 121229358
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Entry
121229358 CDS
T04793
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121229358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
121229358
03110 Chaperones and folding catalysts [BR:
ghi03110
]
121229358
03029 Mitochondrial biogenesis [BR:
ghi03029
]
121229358
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
121229358
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
121229358
Messenger RNA biogenesis [BR:
ghi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
121229358
Chaperones and folding catalysts [BR:
ghi03110
]
Heat shock proteins
HSP60 / Chaperonin
121229358
Mitochondrial biogenesis [BR:
ghi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
121229358
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121229358
Exosomal proteins of other body fluids (saliva and urine)
121229358
Exosomal proteins of breast cancer cells
121229358
Exosomal proteins of colorectal cancer cells
121229358
Exosomal proteins of bladder cancer cells
121229358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
121229358
NCBI-ProteinID:
XP_040969408
UniProt:
A0ABM3BQS1
LinkDB
All DBs
Position
A05:complement(12750526..12755010)
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AA seq
609 aa
AA seq
DB search
MASSFIAMSSIGSLGFPCSKQMDKKFFNSSGRLSSFESISSSAFLGKKQKVILRRGHSSK
IRAMAKELHFNTDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV
AKEVELEDPVENIGARLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGASPIQI
SRGIEITTKALVSELKSMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMGKVGRKGIVTL
EEGSSSENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIHVL
EEAIKGGYAIIIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKGQYLDDIAVLTG
GTVIREEVGLSLDKAEKEVLGHAAKVVLTKETTTIVCDGSTQEAVNKRVSQIKNLVEAAD
QEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
TLLRLAAKVDAIKETLDNDEQKVGADIVKRALSYPMKLIAKNAGVNGSVVIEKVLSNDNP
SYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVARTFLTSDAVVVDIKKPEPFPAGN
PMDNSGYGY
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatctttcattgccatgtcgtcaattggctctctaggatttccttgcagtaag
cagatggataagaagtttttcaattcttcaggtcgattgtcctcatttgaatctatttca
tcaagtgcctttctaggcaagaaacagaaggtgattttgcggagaggacactcttccaaa
attcgggctatggccaaggagctgcattttaacacggatggttctgctatcaagaaatta
caaacaggtgttaacaaacttgcagacctagttggtgttactcttggtccaaaagggaga
aatgtagttttagagagcaagtatggctccccaaaaattgttaatgatggtgtaactgtt
gctaaggaggttgagttggaagatcctgtggagaacattggtgctagattggtgagacag
gctgcttcaaagaccaatgatttggctggtgatggaaccaccacatcagttgttcttgcg
cagggtttaataaccgaaggtgttaaggtggttgctgctggtgcaagccctattcaaata
tcgagagggattgaaataactacaaaggccctggtgtctgaacttaagtcaatgtcaaag
gaggttgaagacagtgaattagcagatgtggctgctgttagtgcaggaaacaactatgaa
gttggcaatatgattgctgaagctatgggaaaagttggaagaaaaggcatagtgactctt
gaggaaggtagcagttcggaaaacagtttgtatgttgttgaagggatgcaatttgaccgt
ggttatatctctccttattttgttactgatagtgagaaaatggctgttgaatatgaaaat
tgcaagttactcctggttgacaaaaagataacaaacgcaagagatctcatccacgttttg
gaagaggctattaaagggggttacgcaattataataattgcagaagacattgaacaggaa
gctcttgctactcttgttgtaaacaagctcagggggtcactaaagattgcagctctgaaa
gcccctggttttggagagcgcaaaggtcaatatcttgatgatattgcagtactcactgga
ggtactgtgataagagaagaggttggtttatcattggacaaagctgagaaggaggtccta
gggcatgctgcaaaagtggtgctcactaaggagaccacaacaattgtttgtgatggaagt
acacaggaagcagtgaataagagagtttcccagatcaagaaccttgttgaggcagcagat
caggaatatgaaaaagaaaagctcaatgagagaattgcaaagctctctggcggtgttgct
gtcattcaggttggagcacaaacagaaactgaactcaaagaaaagaaactgagagtggaa
gatgctcttaatgcaacaaaggcagctgttgaagaaggcattgtagttggtggaggttgc
accttattgaggcttgctgctaaggttgatgccataaaagagactcttgacaatgatgag
cagaaggttggagcagatattgttaaacgggcactgagctatccaatgaagttgattgcc
aagaatgctggggtcaacgggagtgttgtcattgaaaaggtgctatcaaatgacaaccct
agctatggctataatgctgcaactggaaaatatgaggatctgatggcagctggtattatt
gatcctacaaaagtggtaagatgttgcttggagcatgcagcttctgttgcaaggacattc
ctcacttcggatgccgtggttgtcgacatcaagaagcctgaaccttttcctgctgggaac
cctatggataattcaggttatgggtactaa
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