Gossypium hirsutum (upland cotton): 121229513
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Entry
121229513 CDS
T04793
Name
(RefSeq) N-glycosylase/DNA lyase OGG1-like
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121229513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121229513
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
121229513
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
121229513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
HHH_2
HHH_5
Motif
Other DBs
NCBI-GeneID:
121229513
NCBI-ProteinID:
XP_040970011
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Position
A05:complement(24570024..24572729)
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AA seq
383 aa
AA seq
DB search
MHSLKPPLAMKRPRPPTPPPLSPASTKHTTPPPPPVKSLHPNTPPISSKKPKSHPKWVPL
NLSQTELSLPLTFPTGQTFRWKQTGPLQYTGTIGPHLLSLKHLQNGDVSYFIHFTPSESA
AKLALLDFLNVGISLAKLWEVFSENDSRFAELAKCLKGARVLRQDPVECLVQFLCSSNNN
IGRITKMVDFISSLGTHLGSVGGFDFHEFPSLERLSAVSEEELRQAGFGYRAKYITGTVD
VLQSKPDGGAQWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVW
QIATKYLLPELAGARLTPKLCSRVAEAFVSKYGEYAGWAQTLLFIADLPSQKALLPSHFW
DIKEKKSAKIEDSNSCNIDGNYS
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgcactcactgaaacctcccctagcaatgaaaagaccaagaccacctacgccaccaccg
ctctcccccgcctccaccaaacacacaactccgccgccgccgccagttaaatccctccac
cccaataccccaccaatctcctccaagaagcctaaatcccaccccaaatgggtgccactc
aacctctcccagaccgaactctcccttcccctcactttccccaccggccaaaccttccgc
tggaaacaaacaggcccgcttcagtacaccggcaccatcggaccccatttgctatccctc
aagcacctccaaaacggcgacgtttcttacttcatccacttcaccccttccgaatcggct
gccaagctggccctcctcgatttcctcaacgtgggcatttccttggctaagctctgggag
gttttctctgagaatgactccagatttgccgagctagccaagtgtttgaagggtgctcgg
gttttgaggcaggacccggttgagtgcttggttcagttcctttgttcttctaataataat
atcgggaggattactaaaatggtggatttcatttcctctttgggtactcatttgggcagt
gttggtgggtttgactttcatgagttcccttcattggaacgtttatctgctgtctctgag
gaagagcttagacaggctggttttggttacagggccaagtacattactggcacagttgat
gttttgcaatcaaaaccggatggaggtgctcaatggcttctctctcttcgtaaactggat
cttcaagaggccattgatgctctatgtactttacctggagttggtcccaaggtagcagca
tgtattgctctcttctctctcgatcagcaccatgccattccggttgacacgcatgtgtgg
cagattgctacaaagtacctccttcctgagctagccggtgcccgtttgacacctaagctt
tgcagccgtgtggcagaggcatttgtaagcaaatatggggagtatgctgggtgggctcag
acactcctttttatcgccgatttaccttcacaaaaggccctcttaccatcccacttttgg
gatattaaagagaaaaaatctgccaaaattgaagacagtaacagttgcaatatcgatgga
aactacagttga
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