Gossypium hirsutum (upland cotton): 121229690
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Entry
121229690 CDS
T04793
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121229690
03036 Chromosome and associated proteins [BR:
ghi03036
]
121229690
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121229690
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121229690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HHH_9
HHH_3
Tex_central_region
Tex_N
Tex_YqgF
S1_RRP5
HTH_44
RuvX
Motif
Other DBs
NCBI-GeneID:
121229690
NCBI-ProteinID:
XP_040970430
LinkDB
All DBs
Position
A05:108220316..108229773
Genome browser
AA seq
1484 aa
AA seq
DB search
MKRKGLTSTYEDNPGEEGEENMEALDDDDEEENRENLDQFECDGFIVDDEEEEEDENDQV
LKSKKTKKKKRKMRSVKDPVLYDDDSELVQENRISGICQFPKETEMCKRLKKAGKFTKVV
EQSGSSSDEGLLFDDIFGEEEASFCGQTYEMSDFIVGEEKSYGEGSSLRWLKMNKKKMEQ
VVTICSSALDDKVPITDDANQTLNHQKQVQASKMNLDNSSEFEPFLLANKYTTERDDLIR
QTDIPERMQMIEEIVGPLPLDKRSIEEETIWIHNQLVMNSYILFCKKRTEERSVEVSVLL
NKITKEDIMRFLELHHVEKFDVPFIAMYRKEQCLSLLDDFEQNEVENEDNDAVGQAGQVK
WHKVLWIIKEFDKMWLLLQKHKSVLQMHQRKIYDEECLKIDNSEKYTLNKQLFESISKSL
NEAETKEEIDDVDAKFCLHFLSAEEKMDGKFKRPIRKSLYSNCMMAGLWKLASQFRYASE
QLSLQIALEKMDMEFRDYPDEPPEEIALNFTCAMFETPELVLKGARHMAALELSCEPCIK
KHIRSIFREKVVVSTNPTPEGNVTIDCFHQLSSIKWLRDKPLSEFNDAQWLLIQKAEEEK
LLQVSIKMPETTLNKLIIGFSDVYLIEGAGRSAQLWKEQYKLILHDAIFNFMLPAMEKEA
RNFLTARAKHWLLMECGKELWKMVSVGPYSCNVILGSVESVAPKVMACCWGPGKPATTFV
MLDSSGVLLDTLEARSFSFRSQTVDDKQRKKNDRQRVLKIMKSHQPHVIVIGAANASCVR
LRDDVKEIISKLEENLRDLGQATGGISVVFGDESLPQLYEHSEISSDQLPEQPGIVKRAV
ALGRYLQNPLAMVATLCGANKEIVSWKLSSLDNFLTPDEKYEMIEQVMVDVTNQVGVDIN
FAVRHDWYFPLLQFVSGLGPRKASILQRETVQYRAVNSRKELASFGLKTEKVFHNAAGFL
CVRSSRLPCTSFDGTRIHPESYELAERLAEAVCNNITETPLEYVKNEPQVLSTFDINDFS
DNYEKETGENRRETFYLIKMELLHGFLDPRKPYKAPSPDEEFNMICGKNGTAVAEGRFVQ
AIVRHVRPQQAFCVLDSGLTGIIMKDDFLDEDDDCSLQNKLHEGDHVSCKIKQIDKSKCQ
ALLTCKESEMKRIKYENFGEVDPYYHEGGIIPLNQQHKSCIEEKLGKEHFMPRTISHPCF
RNVAMDEAMEFLSDKDAGESIFRPSSRGPSYLTLTLKVFTELYVNKDIAESGKDHKDIKS
MLHLGKTLKIGDKTFGDLDEVMDRYVAPLVKHLKEMLGFRKFKRGSKAEVDGILTAEKAE
YPLRIVYYFGVSYEHPGTFILSYIRSKNLHHEYIGLLPNGFRFRKQTFEKIEHLVGYFQT
NINALQHKSLALESLPIKNSPGAYTGDGRQGQFNYSKGRDFSGGRNHRNSDGDEDVGKKH
PSGIPRPRNAPSRVSSDIATKCSSYIDIALNNENLPGGWSSGGN
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaaagggttaacatcaacgtatgaagacaacccaggggaagaaggggaagaa
aacatggaagcacttgatgatgacgatgaagaagaaaacagggagaatttggaccaattt
gaatgtgatgggtttatagtggatgatgaagaggaggaagaagacgaaaatgatcaagtt
ttaaaaagcaagaagacgaaaaagaaaaagaggaaaatgagatcagtgaaggatcctgtt
ctgtatgatgatgatagtgaattggttcaagaaaacagaatttcaggcatttgtcaattt
ccaaaagaaactgaaatgtgtaagcggcttaaaaaggctggaaaatttactaaggtggtt
gagcagtctggttcttcttctgatgagggcctgctatttgatgatatattcggtgaagag
gaagcttcattctgtggtcaaacctatgagatgagtgattttattgtgggtgaggaaaaa
tcttatggagagggatcatctctaaggtggttgaagatgaacaaaaagaagatggagcaa
gtcgtaaccatttgttcatctgccttagacgacaaggttcctattactgatgatgccaat
cagaccctaaaccatcagaagcaagttcaagcttcaaaaatgaacctggataattctagt
gagtttgagcccttcttattagccaacaagtatacaactgagagggatgatcttatcagg
cagactgacatcccagagaggatgcagatgattgaagaaatcgtggggcctcttccactt
gataaaaggagcatagaagaggagactatttggatacataatcaacttgtaatgaattca
tatatattgttctgcaagaaaagaactgaagaaagatctgtagaggtatctgttctactg
aacaaaattacgaaggaagatattatgaggttcctggaattgcatcatgtggagaagttt
gatgttccatttattgccatgtatcggaaggagcaatgtctgagtctgctggatgatttt
gagcaaaatgaggttgagaatgaagataatgatgctgttggacaagcagggcaagtgaag
tggcataaggtactttggattataaaagaattcgacaaaatgtggttgctccttcagaag
cataagagtgtgcttcaaatgcaccaaaggaaaatttatgatgaggaatgtctgaagatt
gataacagtgaaaagtatactttgaataagcagttattcgaatcaatatcaaagtctctc
aatgaagctgaaacgaaggaagagattgatgacgtggatgcaaagttctgcttgcatttt
ctttcagctgaagagaaaatggatggaaaatttaagaggccgataaggaaatccctttat
agtaactgcatgatggctggcttatggaaactagccagccagtttcggtatgcctctgag
cagctcagtttgcagattgctttagagaaaatggacatggagtttcgagattatcctgat
gaaccacctgaggagatagcattaaattttacgtgtgctatgtttgaaactccagaacta
gtgcttaaaggtgctaggcacatggctgcattggagttgagctgtgagccatgtatcaag
aaacacatccgcagcatatttagagaaaaagttgtagtttcaacaaacccaactcctgaa
ggaaatgtgactatagattgctttcatcagctttcaagcattaagtggctacgcgacaaa
ccactttctgaattcaatgatgctcaatggcttcttattcaaaaggctgaagaagagaag
ctccttcaagtttctataaaaatgccggaaactacactgaataaattgatcattggcttt
agtgatgtctacttaatcgaaggagctggaagatctgctcagctttggaaagaacagtac
aagttaattctacatgatgctatcttcaacttcatgcttcctgctatggagaaggaagct
cggaactttttgactgccagagcaaaacactggttgcttatggaatgtgggaaggaacta
tggaagatggtttctgttggtccttattcatgcaatgtaattcttgggtcagtggaaagt
gttgcaccgaaagtaatggcttgctgctgggggcctgggaagcctgcaacaacatttgtg
atgttagactcatcaggagtattgttggatacattggaagccaggtccttctccttcagg
tcacaaactgttgatgacaagcagcgcaagaaaaatgatcggcaacgtgtccttaagatc
atgaaaagtcaccaaccacatgtcattgttattggtgcagcaaatgcatcttgtgttcga
ctgagagatgatgtgaaagagatcatttctaaattggaggaaaatcttagagaccttggt
caagctacaggtgggattagtgttgtttttggtgatgaatccttgcctcagctttatgaa
cattctgagatttcgtcagatcagcttccagaacagccaggcattgttaagcgagctgtt
gctcttggccgttacctccaaaatccattggctatggttgccacgctttgcggagctaat
aaagagatagtatcttggaagcttagctctttagataactttttaacacctgatgagaag
tatgagatgattgaacaggtgatggtcgatgtgacaaatcaggtgggtgttgatataaat
tttgcggtgagacatgattggtattttcctttgcttcagtttgtttccggacttggacca
cggaaagcttccatcttacaaagggaaactgttcaatatcgagcagttaatagtagaaag
gagttggctagttttggacttaagacagaaaaggttttccataatgcagctggtttctta
tgtgtccgtagcagtcggctgccatgtactagctttgatggtacaagaattcaccccgag
tcatatgagcttgcagagagattggctgaggctgtatgtaataatattacagagacacct
ctagagtatgtaaaaaatgaaccacaagtgttgagtacatttgatattaatgatttttca
gataattatgaaaaagagaccggtgaaaatagaagagagaccttttatcttattaagatg
gaattgctccatggatttctagaccctcgtaaaccttataaagcaccatcccccgatgaa
gaattcaatatgatatgtggaaaaaatgggactgctgttgctgaaggaagatttgttcaa
gctattgtacgccatgttcgaccacaacaagctttttgtgtgcttgattcaggcttgact
gggataataatgaaggatgactttttggatgaggatgatgattgttctttgcaaaacaag
ttgcatgagggggaccatgtatcgtgtaagattaagcagattgacaagagtaaatgccag
gctcttctgacttgcaaagaaagtgaaatgaagaggatcaaatatgaaaattttggtgaa
gttgatccttactatcatgaaggtgggatcattccgttaaaccagcagcacaaaagctgt
attgaggagaagctcggaaaagagcatttcatgccacgaacaattagtcatccttgcttt
agaaacgtggcaatggatgaagcaatggagtttctatcagataaggatgccggtgaaagt
atatttcgtccaagttcaagaggcccatcttatttgactctaactttaaaagtctttact
gaactttatgttaataaagacattgctgaaagtgggaaagatcacaaggatatcaaaagc
atgctacatcttgggaaaacattaaagataggggataaaacttttggtgatttagatgag
gttatggatcgttatgttgctccactggtgaagcacttgaaagaaatgctaggtttccga
aaattcaagaggggttcaaaagcagaggttgatggaatcttgacagctgagaaagcagaa
taccctttgaggatagtttattatttcggagtttcttatgagcatccaggaactttcatc
ctgtcatacataagaagtaaaaacctacaccatgaatatattggattgcttccaaatgga
ttcagattcaggaaacaaacatttgagaagattgaacatctcgtgggatattttcagacg
aacatcaacgcattgcagcacaagtcactggcccttgaaagtcttccaatcaagaattct
ccaggagcatatactggtgatggtaggcaaggccagttcaattatagcaagggcagagat
ttttcaggaggaaggaaccatagaaacagtgatggagatgaagatgttgggaaaaagcat
ccaagtgggattcctaggccacgcaatgcccctagtcgcgtctcttccgatattgctaca
aaatgcagtagttatattgatattgccctcaataatgaaaatctgcctggtggatggtcc
agcggcggaaactag
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integrated database retrieval system
