Gossypium hirsutum (upland cotton): 121230548
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Entry
121230548 CDS
T04793
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121230548
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121230548
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
121230548
NCBI-ProteinID:
XP_040971388
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Position
A06:120813529..120814854
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AA seq
378 aa
AA seq
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MATTLSCCFTLVVFMAILMASPSLSLANMNVIDKCWRGNPLWRSQRQQLAKCSVGFVGKM
INNIGKDVMKYKVTDPSDDPLNPKSGTLRYGTTMIKGKVWITFKNSMTITLQRPLLLSSF
TTIDGRGVDVHITGAGCLLVYQATDIIIHGLRIHHCKAQSPSIVMGPNAKVIPLGQMDGD
AIRLVTARKVWIDHNTLYECQDGLFDVTRGSTNITVSNNWFRNQDKVMLLGHDDGHLRDK
NMKVTVIFNHFGPKCNQRMPRVRHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFIAP
NDVGNKEVTWRKGEKGLWKFYSVGDVFKNGASFSKQTGVGGAKPNYNQEQNFKVVDAGSV
KELTSESGVLRCSRSLIC
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacattatcttgttgcttcacattggtcgttttcatggccattctaatggca
agtcctagtttgagtttggctaatatgaatgtaatcgataaatgttggagagggaaccct
ctttggcggagtcaacgacaacaattggccaaatgctccgtcggttttgtcggcaaaatg
atcaacaacattggtaaagacgtcatgaaatacaaggttacagatccttccgacgaccct
ttgaatcctaaatcagggacccttcgttatggaaccacaatgatcaaaggaaaagtatgg
atcacattcaaaaatagcatgaccatcacactccaaagaccacttcttttaagtagcttc
actaccatcgacggtcgtggcgtcgatgtccacataactggcgctgggtgcctgttggtg
taccaagcgaccgatataatcatccatgggcttcgcatccaccattgcaaggcccaatca
cctagcattgtgatgggtccaaatgcgaaggtgatccctttaggccaaatggatggagac
gctataagattggtcaccgcaaggaaagtgtggattgatcataacacattgtatgagtgc
caagacggcctcttcgatgtcactcgcggttccaccaatatcaccgtgtcaaacaactgg
ttcaggaaccaagacaaagttatgctcctcggacacgacgatggtcatttgagggacaaa
aacatgaaggtcactgtcattttcaaccatttcggacctaagtgcaaccaaagaatgcca
agagttcgccatggatatgcacacgtagcgaacaatttctatcaagggtgggaacaatac
gctattggtggtagcatgagccctagcatcaagagtgaagccaattttttcatcgctcct
aatgatgttgggaacaaagaggtaacatggagaaaaggagagaaaggtttatggaaattt
tattctgtaggggatgtatttaaaaatggagcatcatttagtaagcaaacaggtgtaggt
ggagctaagcctaactataaccaagaacaaaattttaaagttgtcgatgctggatctgtt
aaggaattgacaagtgaatctggtgttttacgatgctctagaagtttaatatgttga
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