Gossypium hirsutum (upland cotton): 121230842
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Entry
121230842 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 12b-like isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121230842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121230842
03036 Chromosome and associated proteins [BR:
ghi03036
]
121230842
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121230842
Coactivators
SAGA/TFTC/STAGA complex
121230842
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121230842
STAGA complex
121230842
TFTC complex
121230842
SAGA complex
121230842
SLIK complex
121230842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
121230842
NCBI-ProteinID:
XP_040972268
LinkDB
All DBs
Position
A06:126744591..126755720
Genome browser
AA seq
630 aa
AA seq
DB search
MAETTSSTSSPKHLQSPNPLLMDPSSSVPTPPPSSAAASNINPTQTATPLTAPSPTATPT
TNPSIDPSLQNLQQQQQQISQISSPPLSNLAQQQQQQQILQQQTQQGVGGLSNFQVQQNL
QRSPSISRINQLQQQQQQSQQQQQQQSQYGNVLRQQAGLYGQMNFGGSASIQANQQQNQQ
MGNPNLSRSALIGQSGHLPMLGGAAAAAAAQYNYQSQLLASPRQKAGLVQGSQFHAGNPT
GQSLHGMQAMGMMNLSSHLRANGALYAQQQMNQGQMRQQLSQQTQLTSPQVQSLQRTSSQ
AFINPQLSGLAQNGQQGMMQNSLLQQQLLKQIPSISGPGSAPFRLQRQSQVLLQQQLPFS
SPQLQNSMGLNSQQLSQLVQQQSQMGHPQMQQPQQQLQQQLQQQPQQQLQPQQSPLHQQQ
QQSPRMPGPAGQKTLSLTGSQPNATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVD
SQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDILLHLEKNWRLTIPGF
SSEERNQTRPLSSDLHKKRLDMVTEFFSTKIRALMESSQPEINANNPKEMIRQGLGNPVG
ANNLMRPSPSSEQLVSQAVGSQMLQQITRY
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaactacttcttcaacatcatcccccaagcatctccagtcgccaaatcccttg
ttgatggacccttcatcatcggttccgacaccgccaccgtcatcggcggcggcgtcaaat
attaacccgacgcagacggcgacgccgctaacagccccatctccgacagcgacaccaaca
acaaatccctcaattgatccctcactgcaaaatttgcagcagcagcagcagcaaatctcg
caaatttcgtctccgcctctttcaaatctcgcccaacaacaacaacaacagcaaatcttg
caacaacaaacgcaacaaggtgttgggggtttatcaaattttcaagtgcagcaaaacctt
caaagatcgccgtcaatttcacgtattaatcaactccaacaacagcaacaacaaagccag
cagcaacaacagcaacagtctcaatatggcaacgttttaagacaacaagctgggttatat
gggcaaatgaattttggtgggtcagcttcaattcaagcaaaccaacaacaaaatcaacag
atgggcaatcctaatttatcaaggtcagctttgattggacaaagtggtcatttgcctatg
ctcggtggtgcagctgccgccgccgctgctcagtataattatcagtctcagcttttagct
tcgccgaggcagaaagctggcttggtacaagggtctcagtttcatgcaggaaatccaacc
gggcaatctttgcatgggatgcaggcaatggggatgatgaatttgagctcacatttaagg
gctaatggagctctttatgctcaacagcagatgaatcagggacagatgagacagcagtta
tcgcaacaaacacaactcacatctcctcaggttcaaagcttacaaagaacatcatctcag
gcatttataaacccccagttatcagggctggctcagaatggacaacagggtatgatgcag
aactctctcttgcagcaacagttgttgaagcaaataccatcaatatctggtccagggtca
gctcccttccgccttcagaggcagtcacaagttctcttgcaacagcaactgcctttttct
tctcctcagttgcaaaattctatgggcttgaattctcaacaattgtcccagcttgtacaa
caacaatcacaaatggggcatcctcaaatgcagcagccacagcaacaactacagcagcag
ctgcaacaacaacctcaacaacaattacaaccacaacaatcaccattgcatcagcaacaa
cagcaatctccgaggatgcccggacctgcaggccagaaaactctcagtttaactggatca
cagcccaatgcaactgcatctggtacaaccacacctgggggaagttcaagccaaggaact
gaagcgaccaatcaacttctcggaaaaagaaagatacaagatctagtttcacaggttgat
tcgcaaggaaagctggaaccagaagttgaagatctacttctggagattgctgatgatttc
atagactctgtgactacatttgcatgcagtttggcgaagcatcggaaatcttcaacatta
gagtccaaggatatcttgctacatttagagaaaaactggcgtttgactattccaggattt
tcaagcgaagagcggaaccaaacaagaccgttatcgagtgacctccacaagaagcgtctt
gatatggtgaccgaatttttcagtactaaaatacgggcactgatggaatcgtcacagccc
gaaataaatgcaaataatcctaaagaaatgataagacaaggacttggcaacccagttggt
gcaaacaatttaatgagaccttcaccgagttccgagcagttggtttcacaagcagttggt
tcacaaatgctgcagcaaataacacggtattga
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