KEGG   Gossypium hirsutum (upland cotton): 121231997
Entry
121231997         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121231997
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    121231997
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     121231997
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     121231997
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002 DUF7115
Other DBs
NCBI-GeneID: 121231997
NCBI-ProteinID: XP_040973178
UniProt: A0ABM3C1J6
LinkDB
Position
A07:4103870..4109884
AA seq 1204 aa
MGASPDGKGNVGMGSTSGEKFANGTDLNMDIDEDDDVFDELVSVQELGEEFLRNFCRKAA
VSFFNQYGLISHQINSYNDFIKYGLQNTFDSFGEFVIHSGYDPSKKGEGDWRHARVKFGK
VTVERPTFWAVTGGNELNMLPRHARLQNMTYSSRMKVTVELQVYTAKSVKSDKFKTGREE
IVEEEIVHQDNREIIIGRIPVMVKSELCWMNEVEKSDCDFDHGGYFLIKGAEKIFIAQEQ
ISLKRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKVEYIKGGEKILTVFFLSIEIPVWI
LFFALGVRSDKEVVSLIDYGSSDSSISNILFASIRDADWKCRNFREESAALNHLDRLRKE
TRFPPEESVEECLGKYLFPSLKGFKQKARFLGYMVKCLLQAFTGHRKCDNRDDFRNKRLE
LAGELLEREMKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAW
SHPYKKMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLATTALVSTNIVKSVVESIVDTLFDSGMEKVVNDTSSSLDGKDKVFLN
GEWVGVCEDSLFFAAELRRKRRRRELPYQVEIKRDEHKGEVRIFTDAGRILRPLLVVENL
FKLKAFKGKENYAFQPLLDKGIVELIGAEEEEDCRTAWGIRYLLTEVEGKQPVKYTHCEL
DMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQMYYPQRP
LFHTMTADCLGKSGFPLGQNRLDPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASIERG
MFRTEHVRSYKAEVDNKEIQEKRRKAEDIVNFGKTESKIGRVDSLDDDGFPYIGASLQSG
DIVIGRFAESGADHGVKLKHTERGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM
HGQKGVLGFLESHENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKKH
ATPFSTLSIDAITEQLHRVGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKV
KFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLFTLSDCSQMHVC
QNCKNVANVIERTVAAGRKIRGPYCRVCQSGDEIVKVSVPYGAKLLCQELFSMGISLKFE
TQLC
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgggggcttcgccagatggtaagggaaacgtgggaatgggcagtactagtggtgaaaag
tttgcaaatggaactgatttgaatatggatatagatgaagatgatgatgtttttgatgag
ttggtcagtgtgcaagagctgggagaagagtttttgaggaatttctgtaggaaagctgcc
gtgtctttcttcaatcagtatggtctaataagtcatcaaataaactcttacaatgatttc
ataaaatacggtctccagaacaccttcgactcctttggggagtttgttattcattctggt
tatgatccatcgaagaagggagaaggtgactggcgtcatgccagagtgaagtttgggaaa
gtcaccgttgagaggccaaccttttgggctgtcaccggaggcaatgagctcaacatgctt
cctagacatgcccgccttcagaacatgacttactcatccaggatgaaggttactgttgag
cttcaggtatatacagcaaaaagtgtaaagagtgacaagtttaaaactggaagagaagaa
attgttgaagaggagatcgtgcatcaagataacagggagattataattggaaggatccct
gtgatggttaagtctgagctgtgctggatgaatgaggttgaaaagtctgattgtgatttt
gaccacggaggttattttctcatcaagggtgcagagaagatattcattgcacaagagcaa
atctctctgaagaggctctggatttcaaacatacagggctggactgttgcctacaggtcg
gaggtgaagagaaataggctaattatcagactagtggagaattccaaagtagaatatatc
aaagggggggagaaaatcctgactgttttcttcttgtcgattgagatccccgtttggatt
ttgttttttgcccttggtgtacgatcagacaaggaagttgtaagtctgattgattatgga
agcagtgattcaagtatatcaaacatactgttcgcctcaattcgtgatgctgattggaaa
tgccgcaattttcgtgaagaaagtgctgctctcaaccatttggataggttacgcaaagaa
actagatttccccctgaagaaagtgttgaagagtgccttggaaagtatctgtttccctct
ctcaaaggattcaagcagaaggctcggttcttggggtacatggtcaagtgtcttttgcaa
gcattcactggtcatcgaaaatgtgacaatagagatgattttaggaacaagaggttggag
ttggcgggtgagctgcttgagcgtgagatgaaagttcatattgcccatgcaaggagacgc
atggcaaagactctgcagagggatctttatgcggatcgtactgttcgtccaattgagcat
tatctcgatgcttccatagttacaaatgggctctctagagcattttctactggagcttgg
tcgcatccttacaaaaagatggaaaggatatcaggtgtagtggcaaatctcggacgagca
aatccattgcagacaatggttgatttgagaaagacacgacagcaggttcagtacactgga
aaggttggagatgcgagatacccacatccttctcattggggaaaagtttgcttcctctct
actcctgatggtgaaaattgtgggcttgttaagaatctggctaccacagctcttgtgagt
acgaacatagtgaaatctgtagtggaatcaatagttgacacgttgtttgattctggaatg
gagaaagtggttaatgatacgtcaagctcacttgatgggaaagataaggtctttctgaat
ggggaatgggttggtgtttgtgaagattctcttttctttgctgctgaacttagaagaaaa
cgacgcaggagagaattgccgtatcaggtggaaattaaaagagatgagcataaaggagag
gtgcggatctttactgatgctgggaggattctacgcccgcttttagttgttgaaaatctg
ttcaaactaaaagcattcaagggcaaggaaaattatgctttccagccccttttagacaag
gggattgttgaactcattggagctgaagaggaagaagattgtcgcacggcatggggtatc
aggtacctcttaacagaagttgaggggaagcaacctgtcaagtacacgcattgtgagctg
gacatgtcatttcttttgggtttaagctgtggaatcattccatttgccaatcatgatcat
gcgcggagggttctctaccaagcccagaaacattctcagcaggcaattgggttctctaca
acgaacccaaacatcagggtggacactttgtcgcaccagatgtattatccccaaaggcca
ctcttccatacgatgactgctgattgtcttggtaaatctggatttcctcttggtcagaat
agattggatccgaagccagaactctacaatggccagaatgctattgtggctgtaaatgtt
catcttggttacaaccaagaggattccttggtaatgaaccgggcctcgatagagcgtggg
atgttccgcaccgaacatgtaagaagttacaaagctgaagtagataacaaggaaatccag
gagaagaggcggaaggctgaagatattgtaaactttggaaaaacggaaagtaagattgga
cgggtggacagtcttgatgatgatggttttccttatattggtgcttccctgcagtctggt
gacattgtcattgggaggtttgcagaatctggagctgatcatggtgtaaaactgaagcac
accgaaagaggcatggttcagaaagttgtgttatcttcaaatgatgatgggaaaaatttt
gctgtggtatctctgagacaggttcgttctccctgtcttggagacaagttctcaagcatg
catgggcaaaagggggtccttggttttctggagtctcatgagaactttcctttcacaact
caaggaatagttcctgatatcgtgattaacccacatgcatttccttcacgacaaacacct
ggtcaactcttggaggctgccttgggaaaggggattgcctgtggtgggtcaaagaaacat
gccacccctttctccactctctccatagatgccattacagaacagcttcacagggttggg
ttttcaagatggggaaatgagagagtttacaatggtcggactggtgagatggttcggtca
ctcatatttatgggtccaacattttaccagcgtcttgtccacatggctgaagacaaagtg
aaatttcgtaacactggacctgtgcatccacttacaaggcagccagttgcagaccggaaa
cgttatggcgggatcaaatttggtgagatggagcgggactgccttattgctcatggtgca
tcagccaacttgcatgagcgcctcttcacgcttagcgattgctcacagatgcatgtatgt
cagaattgcaaaaatgttgcaaatgttattgaacggaccgtagcagctggtcggaagatt
aggggaccctattgccgggtttgccagtcaggggatgagattgtgaaggttagtgtgccg
tatggtgccaagttactgtgccaggaactattcagcatggggattagtctgaaatttgag
acacagctttgttga

DBGET integrated database retrieval system