Gossypium hirsutum (upland cotton): 121232067
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Entry
121232067 CDS
T04793
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
121232067
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
121232067
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
121232067
NCBI-ProteinID:
XP_040973376
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Position
A07:complement(7223767..7226897)
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AA seq
401 aa
AA seq
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MAIPSLSLLFLFTSLPLVSSSPVKDPELVVQDLHRAINVSRRNLKYLSCATGNPIDDCWR
CDPNWEKNRRRLADCAIGFGKNAIGGRDGKLYVVTDSNDDDPVNPKPGTLRHAVIQDVPL
WIVFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLHIHDCKQG
GNAMVRDSPWHYGWRTTSDGDGVSIFGGSHIWVDHNSLSNCKDGLIDAIYGSTAITISNN
HMTHHDKVMLLGHSDSYMKDKNMQVTIAFNHFGKGLIQRMPRCRRGYFHVVNNDYTHWEM
YAIGGSANPTINSQGNRFTAPNDIFSKEVTKHEDAPESEWKNWNWRSEGDLMVNGAFFTR
SGAGASSSYAKASSLGARPSSHVASITTNAGALNCKKGSRC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccttcactttctcttctcttccttttcacctctcttcctcttgtttcctct
tccccggttaaagaccctgaacttgtagttcaagatcttcacagggccattaatgtgtct
aggaggaaccttaagtatctctcttgtgcaactggtaaccccatagatgattgctggaga
tgtgaccctaactgggagaagaacagacggaggctagccgactgtgcaatcgggtttggc
aagaatgccattggtggaagagacggtaaactctacgttgtcactgattctaatgatgat
gatcccgtgaatccgaaacctggaactttaagacacgctgtgattcaagacgtaccgttg
tggatcgtgttcgctcgtgatatgaccattcaattgaaggaagaactcattatgaactct
ttcaaaacaattgatggcagaggtgctagtgttcacattgctgggggtccatgcattacc
attcagtttgtgaccaacattatcatccatggattgcacatccatgattgcaaacaagga
gggaatgctatggtgagggactccccgtggcactacggttggcgaactacatcggacggt
gatggtgtgtccatctttggtggtagccatatttgggtggatcataactcgttatcaaac
tgcaaggatggtctgattgatgccatttatggatccactgccatcaccatttcaaataac
cacatgactcaccatgataaagttatgttactagggcacagtgattcctatatgaaagac
aagaacatgcaagtcaccattgcctttaatcactttggtaaagggctcatccaaagaatg
ccaagatgtagacgtgggtatttccatgtggtgaacaatgactacacccattgggaaatg
tatgcaattggagggagtgctaatccaaccatcaacagccaagggaatagatttactgca
ccaaatgatatattcagcaaagaggtgaccaagcatgaagatgcaccggagagtgaatgg
aagaactggaactggagatcggaaggtgatctgatggtaaatggtgcttttttcacacgg
tcgggtgctggtgcatcttcaagctatgccaaggcctctagcttgggtgctaggccatca
tcgcatgtcgcttcgataacaactaatgccggtgcacttaattgcaagaaaggctctcgt
tgctga
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