Guyparkeria halophila: GM160_07825
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Entry
GM160_07825 CDS
T06369
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ghl
Guyparkeria halophila
Pathway
ghl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM160_07825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghl03019
]
GM160_07825
03009 Ribosome biogenesis [BR:
ghl03009
]
GM160_07825
Enzymes [BR:
ghl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GM160_07825
Messenger RNA biogenesis [BR:
ghl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM160_07825
Ribosome biogenesis [BR:
ghl03009
]
Prokaryotic type
rRNA processing factors
GM160_07825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGT78810
UniProt:
A0A6I6CZF8
LinkDB
All DBs
Position
complement(1718774..1721620)
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AA seq
948 aa
AA seq
DB search
MKRMLINATHSEEIRVALVDGQRLYDIDIETPSREQKKANIYKATITRIEPSLEAVFVNY
GANRHGFLPFKEISPEYFDPKAVDDKGRPIIKDALKEGQELIVQVEKEERGNKGAALTTL
VSLAGRYLVVMPNNPKAGGVSRRIEGDDRAEIKAALAQLNVPAGMGLIVRTAGVGRDVEE
LQWDLDYLVQVWTAIHEAAESRQAPFLIYQESNLIIRALRDYMRNDIGEILIDEPTIYQQ
AMDFVQMVTPKVAEKIKLYDDPTPLFSRYQIESQIESAYQRNVTLPSGGELVFDVAEAMT
AVDINSGRNTKGQDIEDTAFNTNLEAAEEIARQLRLRDLGGLIVIDFIDMGSSKHQREVE
NRLRDSLKYDRARVQTSRISRFGLLEMSRQRLRASLEESSQHMCPRCNGQGVIRSVESLS
LAILRLLVDEAMKDNTGRVIAQVPIDVATYLLNEKRDQINEIEQANNVDLLLIPNINLET
PHYEIERVRADDSEARSRDVQQLIEPLTVETPSPEPRHRQAEKAAVQTIPRPAQPASEKA
AEPAPAPAATKAKAVEAPAAPQRPTANGAVSLLRRVVGQLFGARADEEEGAETASRRGKP
SGKGDEKSADRSGRKGGGRRQAAGDGGEKAKSARDESQDKGQGKGKSGSRRRRGRGRRGN
GGNAAQQTGGQKPEQQKSEQPSDTTKADTKGKAESSAGKPSGDTSGKGGQGGPGNKGRGR
GDRGPKSEPRTPPPLGERERQMVEQQLAAPISEGKSLPLDVAKKKGVAEELPPNAAVRLE
SSDRLVKASDTKTSKAAATASVTPAAAPTEASAEVTDSGKSEQAASKAAETAPTQGQPVK
EDAAETPPTVEPVADEAKPVAEAEPSSVSETAAKAENPQAAEPADAAPTADSAAEKAEAP
VAKAPEEKGSKEQSAEPTAEANAAETLEAASSNESAAESTTDEEKRER
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctgatcaacgcaacgcactccgaggagatccgcgttgcgctagtagac
gggcaacgcctctatgacatcgacatagagaccccgtcccgggagcaaaagaaggccaac
atctacaaggccaccatcacgcgcatcgagcccagcctcgaggccgtgttcgtcaactac
ggcgccaatcgccacggtttcctgcccttcaaggagatctcgcccgagtacttcgacccc
aaggcggtcgacgacaaagggcgtccgatcatcaaggacgcgctcaaggaaggtcaggaa
ctgatcgtccaggtcgagaaggaagagcgtggcaacaagggcgcggccctgaccacgctg
gtcagcctggccgggcgctacctggtggtcatgcccaacaaccccaaggccggtggcgtc
tcgcgccgcatcgaaggcgatgaccgcgccgagatcaaggccgcgctggcccagttgaac
gtgccggcgggcatgggcctgatcgtgcgcaccgccggggtgggccgcgacgtcgaggaa
ctccaatgggacctcgactacctcgtccaggtctggaccgcgatccacgaggcggccgag
agccggcaggccccgttcctgatctaccaggaaagcaacctcatcatccgggcgctgcgc
gattacatgcgcaacgacatcggcgagatcctgatcgacgagcccaccatctaccagcag
gcgatggatttcgtccagatggtcacgcccaaggtcgccgagaagatcaagctctacgac
gacccgaccccgctgttctcgcgctaccagatcgaatcgcagatcgagtccgcctaccag
cgcaacgtcacgctgccctcgggcggtgaactggtgttcgacgtcgccgaggcgatgacc
gcggtcgacatcaactccgggcgcaacaccaagggccaggacatcgaagacaccgccttc
aacaccaacctggaggcggccgaagagatcgcacgccagttgcgcctgcgggatctgggc
gggctgatcgtgatcgatttcatcgacatgggctcctccaagcaccagcgcgaggtggaa
aaccgcctgcgcgattcgttgaagtacgaccgcgcccgggtacagaccagccgcatctcg
cgcttcggcctgttggagatgtcgcgccagcgcctgcgcgcctcgctggaggaatccagt
cagcacatgtgcccgcgctgcaacggccagggcgtgatccgctcggtcgagtcgctgtcg
ctcgccatcctgcgtctgctggtcgacgaggcgatgaaggacaataccggccgcgtgatc
gcccaggtgccgatcgatgtcgccacctatctgctgaacgagaaacgtgaccagatcaac
gagatcgagcaggccaacaacgtcgacctgctcctgatcccgaacatcaatctcgagacg
ccgcactacgagatcgagcgggtgcgcgccgatgacagcgaggcccgctcgcgcgacgtg
cagcagctgatcgagccgctgaccgtcgagaccccgtcgccggagccgcgtcatcgccag
gccgagaaggccgcggtgcagaccatcccgcgcccggcccagccggcctcggaaaaggcc
gccgagccggccccggcgccggcggcgaccaaggcaaaggccgtcgaggcgccagcagca
ccgcagcgcccgaccgccaatggcgcggtttccctgttgcgtcgcgtggtgggtcagctc
ttcggtgcccgcgccgacgaggaggagggcgccgagaccgcatcgcgccggggcaagccg
tccggcaagggcgacgagaagtcggcggatcgttccggccgcaagggcggcggtcgccgt
caagcggccggtgacggtggcgagaaggcgaagtccgcccgcgacgagtcccaggacaag
gggcagggcaagggcaagtccggcagccgtcgtcggcgtggccgtggtcgccgtggcaac
ggtggcaacgcggcccagcagaccggtggccagaagccggagcagcagaagagcgagcag
ccgtctgataccaccaaggccgacaccaagggcaaggccgagtcctccgctggcaagccc
tccggcgatacctccggcaagggtggccaaggcggcccgggcaacaagggtcgcggtcgt
ggtgaccgcggtcccaagagcgagccgcgcacgccgcccccgctgggcgagcgcgagcgc
cagatggtcgagcagcagctggccgcgccgatcagcgaaggcaagagcctgccgctcgac
gtcgccaagaagaaaggcgtggccgaggaactgccgccgaacgccgccgtccggctcgaa
agcagtgaccgcctggtcaaggcaagcgataccaagaccagcaaggccgcagccaccgcg
tccgttacgccggcggccgcgccgaccgaggccagtgccgaggtgaccgattcgggcaag
tccgagcaggcggcgagcaaggcggcggaaaccgcgccgacgcaaggccagcccgtcaag
gaagacgccgcggaaacgccgccgacggtcgagccggtcgccgacgaggcgaagccggta
gccgaggccgagccgtcgagcgtgtccgagacggcggcaaaggccgagaatccgcaggcg
gccgagccggctgacgcggcacccactgccgactcggcggcagaaaaggccgaggcgccg
gtagcgaaggcaccggaagagaagggctccaaggagcagagcgcggagccgaccgccgag
gcgaatgccgcggagacgttggaagccgcgagctccaatgagtccgccgccgagtcaacc
accgacgaggaaaagcgcgagcgctga
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