Gleimia hominis: CJ187_003380
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Entry
CJ187_003380 CDS
T09100
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ghm
Gleimia hominis
Pathway
ghm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ187_003380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghm03019
]
CJ187_003380
03009 Ribosome biogenesis [BR:
ghm03009
]
CJ187_003380
Enzymes [BR:
ghm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ187_003380
Messenger RNA biogenesis [BR:
ghm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ187_003380
Ribosome biogenesis [BR:
ghm03009
]
Prokaryotic type
rRNA helicases
CJ187_003380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIK65395
LinkDB
All DBs
Position
749820..751562
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AA seq
580 aa
AA seq
DB search
MSAIEKLGFETPTPIQAEAIPPLLDGRDIVGVAQTGTGKTAAFGLPMLAHLDPSEPRVQA
IVLAPTRELAVQSGDAIASFAADLPDITVVTVYGGAPYPPQIRALKNGAQIVVGTPGRII
DLIEKDVLHLDQVKVLVLDEADEMLRMGFAEDVETIASAAPQPGERITALFSATMPPAIQ
RVAQQHLIEPVRVEIAPQSSTVDTVEQTYAILGFRHKKEALARVLSTADTDAAIVFVRTR
VDVDDVSSDLTRRGFKASGLSGDVSQAERERIIARLRDGSLDVLVATDVAARGLDVERIG
LVVNYDVPREAEAYVHRIGRTGRAGRTGRSLTFFTPKERFRLKQIEKLTGTHMTQAGIPT
RRDVASHTGKQLLAEVAPRLERGHLDLYEELLETVTQQLGLDYPQVAAALLANAVGDTGQ
NRGAAQHADEDFANGSFETGGKKRKGRGSRAGTRMEPTGSGKRYRVEVGRKDGVKPGAIV
GAITGEAGLSGDDLGRIEIFPTFSLVDIAGELPASALRKIARATVAGRRLRIREDTGPEP
NDSTHRKHRGKSKSFSDRGGRGFDRNAHRAKRRSFKNGRR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccatcgaaaaactggggttcgaaaccccaacccccattcaagctgaagccatt
ccaccgcttttagacggccgcgacatcgttggcgtagcccaaacgggcacggggaaaacc
gctgcgtttggcctgcccatgctcgcccacctcgatccgagcgaaccgcgagtccaagcc
atcgtgctggcccccacccgcgaactggccgtgcaaagcggcgacgcgatcgcatctttc
gccgcggacctgccggacattacggtggtaaccgtatacggcggagcgccctatccaccg
cagatccgcgccctcaaaaatggcgcccaaattgtggtgggcaccccggggcggataatc
gacctgatcgaaaaagacgttctgcacctagaccaagtgaaggttctcgtgctcgatgag
gccgatgagatgctccgcatgggatttgcagaagacgtggaaaccatcgcttctgccgcg
ccgcaacccggagagcgcattaccgcactattctcagccaccatgccaccggcgattcaa
cgagtcgcccagcagcacctgattgagccggtacgcgtcgaaatcgccccgcagtcctcc
accgtcgacaccgtggaacagacctacgctatcctcggttttcgacacaaaaaagaagcg
ttagcacgcgtactctccaccgccgacacggacgcagccatagtgttcgtccgcacccgc
gtggacgtggacgacgtgtcttccgacctgacacggcgcggtttcaaagcctccggcctg
tccggagacgtgtcccaagctgaacgggaacgcatcatcgctcggctgcgcgacggatcc
ctcgacgtcctcgtcgcaaccgacgtggctgcacgcggactagatgtggaacgtattggc
ctagtcgttaactacgacgtaccgcgtgaagcagaagcctacgtgcaccggattggccgc
actgggcgagctggccgcaccggccgctccctcacattcttcaccccgaaagaacgcttc
cgcctcaagcaaatcgagaaactcaccggcacgcacatgactcaggcagggatcccaacc
cggcgggacgtggcgtctcacacggggaaacagctgctggcggaggtggcgccgcgcttg
gaacgcggccacctcgacctgtacgaagaactgctcgaaaccgtaactcagcaactcggc
ttagattacccgcaggtcgccgcggcactgctggcaaacgctgtgggtgacaccggacag
aaccgcggcgcggcgcaacacgcggatgaagacttcgcgaacggcagtttcgaaaccggt
gggaaaaaacgcaaaggccgcggatcacgtgccggcacacgcatggaaccaaccggcagt
ggaaaacgctaccgcgtagaagttggccgcaaagatggagtgaaacccggggcgattgtc
ggcgcaattaccggtgaagccgggttgtcgggcgacgatctggggcgcattgaaatcttc
cccacgttctcgctcgtggatatcgccggtgaactccccgcgtcggcgctacgcaaaatt
gcccgcgccaccgttgcgggccgccggctgcggatccgcgaagacacggggccagaaccc
aacgattctactcacaggaagcaccgcgggaagtcaaaatcgttttctgaccgtgggggc
cgcgggtttgaccgcaacgcccaccgggcaaaacggcggtcgttcaaaaacggtcggcgc
taa
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