Gordonia hongkongensis: MVF96_01980
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Entry
MVF96_01980 CDS
T08182
Name
(GenBank) DEAD/DEAH box helicase
Organism
ghn
Gordonia hongkongensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SNF2_assoc
DEAD
SWIM
SWI2_SNF2
DUF3670
Motif
Other DBs
NCBI-ProteinID:
UPG68665
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All DBs
Position
447805..452034
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AA seq
1409 aa
AA seq
DB search
MAAFDQLSPAESGLLVYFDVATIGRGAAYAQQGRVALDDWDPLFMSATGTCVGSSGELYS
LEIGFGDGARGYVVDVAECDCPVGANCKHAVALALGVMRAGLIGALPQHVGHASEPWRAL
LGDLVAGATSKEPGSAPIGLLVELDDPEWMSLKTVTLRLVTPGKKGNWVRTGITWSSIEP
GYVTEYYRSTTDHPAEHFDPVHLARVRAVHLCAGDKHLYGTSQVHRLDQASAEIWTALRA
AVDDGVVLVAHKSTGAKKVELLPPATPALTVDRGDEGLVVSGGVDFPTVGPSEDDALMLF
GSVPHGASLVRGGTMFLAPLVDDGSSKALRALLDAGTIRIPDTDIAEFADEVLPDLAGRM
SVTVADGAVTRPEITGPDAAVTLRVADDGGAHLEWGVVYRVNGSRRFFPSGQSSGFGDDV
AERRLWKQLRGHLEAAARVCDRWQIQVAGFPGSKFADDPELAEMSRDEALASASVALLTR
RYRYSPVDTARFVTEVAPELRAAGIEVEIVGELPDYRAAEVVPEIGFGAERSDDNDWLGL
SITVEVDGVAVPLHQVLTALSNGATHMLLPDGAYFVLDTPELQRLAELVAEARALGELDR
GRVRRDTHNATLWDELLELGTVDDDLTKWREQLRRLAAATPPVPCPVPTGLHADLRDYQR
AGLDWLNFLWENRIGGVLADDMGLGKTLQSLALIAKVIEEEPQARFLVVAPTSVISNWAV
EAERFVPGLRIATVTETSGRAKIAFADRIAGAQLVVTSYALMRIGIDEFTSASWSAVFFD
EAQFVKNHASKAHQCARRLDAEVKIAITGTPLENNLMELWSLMALTVPGLFPSAKTFTSY
FRKPIESGTEPGRLALLRRRIRPIMLRRTKHQVATDLPAKQEQVLSISLNAKHDKLYQTR
LTRERQSVLGLLDDFEANRFQIFRSLTMLRQLSLHAGLVDEKHTDMDSAKIEFLVEQIPE
LIAEGHSALIFSQFTGFLRLVERALDDAGVEYSYLDGSMTARRRTAAIKQFTSGASKVFL
ISLKAGGFGLNLTEADYCFVCDPWWNPAAEAQAVDRAHRIGQTRPVTVYRLVSANTIEEK
VVALQQRKRDLFDAVVDDGDLFGAAIGADDIRELLGGTTPGADERSRLGPDDVRLRWVEA
GIVRKRCLTQTVTDLLDGLHSRQLRRAAAGERVVVPLEPRIAVSLVLGDRRWSMVRCGPG
EIVPCVTVDDPHGRLDGVAHRPVLARLERTGDGLGDRPTRAEAHRGVGCRCGTEVQGAEI
SRRLRRRASSSQALVPCRRAEGRDLDAYRAVVGPDELLRGGVTGAEWHGDELTDGSLVDA
ETVEPGLFGYLEIVLGVEVHGLREILAGDRIDPADRHAYEERVVGRGGEAKPCRLGLPHG
EQRVGLGPIGMPASKSACVREVEASQPGR
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgttcgatcagttatcgcccgcggagtcgggcctgctcgtgtatttcgacgtc
gcgacgataggccgaggtgccgcatacgcacagcaggggcgcgtagctctcgacgactgg
gacccgctattcatgtcggcgaccgggacctgcgtcggttcgagtggcgaactctactca
ctcgagatcgggttcggtgacggcgcccgcggatacgtggtcgatgtcgctgaatgcgac
tgtccggtcggtgccaactgcaagcacgccgttgctctggcgctgggggtgatgcgtgct
gggctcatcggtgcgttgcctcaacacgttgggcacgcgtcggagccgtggcgggctttg
ctgggtgaccttgtcgccggtgccacctcgaaagagccgggatcggctcccatcggtctg
ctcgtcgagctcgacgatcccgagtggatgagcctgaagacggtgacattgcgcctggtg
acccccggcaagaagggcaactgggtacgcacggggatcacgtggagttccatcgagccg
ggatatgtgaccgagtactacaggtccaccaccgaccatccggctgagcacttcgacccc
gttcacctggcacgagtccgtgccgtccacctctgcgccggggacaaacacctgtacggg
acctcccaggttcaccgattggaccaggcgtccgccgagatctggaccgctctacgggcg
gcggtagacgatggtgtcgtactggtggcgcataagtcgacgggcgccaagaaagtcgag
ctgcttccacccgcgacgcccgcgttgaccgttgatcgcggcgacgagggtctcgtggtg
tcgggcggtgtcgacttcccgactgtcgggccgtctgaggacgacgctctgatgctgttc
ggatcggtgcctcacggagcgagcctggtacgaggcggcacgatgttcctggcgccgctc
gtcgacgacgggtcgtcgaaagccctccgggcactgctcgacgccgggacgatcaggatt
cccgacactgacatcgcggagttcgccgacgaggtcctccccgacctcgccggtcggatg
tccgtgaccgtggccgatggcgccgtgacccgacccgagatcaccggtcccgacgcggca
gtcacgcttcgggtcgccgacgacggcggcgcgcacctcgagtggggtgtcgtctaccgc
gtgaacgggagcagacgattcttcccgtccgggcagagctcggggttcggtgacgacgtg
gccgaacgtcgcctgtggaagcaactccgtggtcacctcgaagctgcggctcgggtgtgt
gatcgatggcagatccaggtcgccgggtttccgggaagcaagttcgcagacgatccggaa
ctcgccgagatgagtcgcgacgaggctctcgcatcggcatcggttgcgctcctgacccgc
cgctaccgttactcgcccgtcgacaccgcgcgtttcgtcaccgaggtcgccccggagctg
cgggctgccggcatcgaggtggagatcgtcggcgagctccccgactaccgtgccgccgag
gtcgtccccgagatcggtttcggtgccgaacggtccgatgacaacgactggctcggcctg
tcgatcaccgtcgaggtcgacggcgtcgcagtgccgctgcaccaggtgctgacggcgttg
tcgaacggagcgacacacatgctgttgcccgacggggcctatttcgtgctagacaccccg
gagctgcaacgcctggccgaactggtggccgaggcccgcgcactgggtgaactcgaccgt
gggcgggtccgccgggatacgcacaacgccacgttgtgggacgagctgctcgaactgggg
acggtcgacgacgatctcacgaagtggcgcgagcagttgcgtcgtctggccgccgcgaca
ccgccggtgccttgtccggtgccgaccgggctgcatgcggacttgcgtgactatcagagg
gccggcctcgactggctgaacttcctgtgggagaacagaatcggcggagtgctggccgac
gacatggggctgggcaagaccctccagtccctggcattgatcgcgaaggtcatcgaggag
gaaccgcaggctcgctttctcgttgtcgcaccgaccagcgtgatctcgaactgggcggtc
gaagcggaacggttcgtaccaggtctgaggattgcaacggtgaccgagacgagcggacgg
gcgaagatcgcgttcgccgatcgtattgcgggagcgcaactggtcgtcacctcgtacgcg
ctgatgcgcatcgggatcgacgagttcacatcggccagttggtcggccgtgttcttcgac
gaggcacagttcgtcaagaatcacgcgagcaaagctcatcagtgcgctcgccgtcttgat
gccgaggtcaagatcgcgatcaccggcacgccactggagaacaacctgatggaactgtgg
tcgctgatggcgttgaccgtgccgggtctgttcccgtcggcgaagaccttcacgtcgtac
ttccggaagccgatcgaaagtggcacggagcccgggcggttggcgttgctacgacgacgg
attcgtccgatcatgctgcggcgcacgaagcaccaggtcgccacggacctgcccgccaag
caggaacaggtgctgtcgatcagcctgaacgcgaagcacgacaagctgtatcagacgcgc
ctcactcgggaacggcagagcgtgctcggcctgctcgacgacttcgaagccaaccggttc
cagatcttccgatcgctcaccatgctccggcaactgagcctgcacgccgggctcgtcgac
gagaagcacaccgacatggactcggccaagatcgagttcctcgtcgagcagattcccgag
ctcatcgccgaaggtcattccgccctgatcttcagccagttcaccggtttcctccgattg
gtcgaacgcgccctcgacgatgccggagtcgaatacagctacctcgacggatcgatgacc
gcgcgtcggcgcactgcggcgatcaagcagttcacgagcggggcgtcgaaggtgtttttg
atcagtctcaaggcgggcggtttcgggctgaacctgaccgaggcggactactgcttcgtg
tgtgatccgtggtggaacccggcggccgaggcccaggccgtggaccgcgcccatcgcatc
ggtcagactcgtccggtcacggtctatcgcctggtgtcggcgaacacgatcgaagagaaa
gtggttgcgctgcaacaacgtaagcgcgacctgttcgacgccgtcgtcgacgatggtgac
cttttcggcgccgccatcggcgccgatgacatccgcgagttgctcggcgggaccacgccg
ggggctgacgagcgaagccgcctagggcccgacgatgtgcggctcaggtgggtcgaagct
gggattgtccggaagcggtgtctgacccagaccgtcaccgatctccttgatggtcttcac
tcccgacagcttcgacgcgccgcggcgggcgagcgagtcgtcgtaccactcgaaccacgg
atagccgtatcgctggtactcggtgatcgtcggtggagcatggtgcggtgcggacccggt
gagatcgtgccatgcgtcactgttgacgatccgcacggtcgcctcgacggtgtcgcccac
cgcccagttctcgcgcggctcgagcggactggcgatggactgggtgatcgacccacccgc
gccgaggcccatcgcggagtcggatgtaggtgcgggacagaagttcagggtgccgagatc
agccggcggctccggcgtcgcgcgtcgagcagccaggcgctcgttccatgtcgacgcgcg
gaggggcgtgacctggatgcgtatcgcgccgtcgtcggacccgacgagctgctccgcggc
ggtgtaaccggagccgagtggcatggcgacgaactgacggacggatctctcgtcgacgcg
gaaaccgtcgagccagggttgttcgggtacctcgaaatagtcctcggcgtcgaagtccac
ggtttgcgcgaaatcctcgccggtgatcgcatcgatcccgccgacagacatgcgtacgag
gaacgggtagtcggtcggggaggtgaagcgaaaccatgccgcctcggcctgccacatggg
gagcagcgtgtcggactcggaccaatcggcatgccggcctcgaagtctgcctgcgttcgt
gaggtggaagcgtcccagcccgggcggtag
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