Gordonia hongkongensis: MVF96_05500
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Entry
MVF96_05500 CDS
T08182
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MVF96_05500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghn03021
]
MVF96_05500
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_05500
Enzymes [BR:
ghn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MVF96_05500
Transcription machinery [BR:
ghn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MVF96_05500
DNA repair and recombination proteins [BR:
ghn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MVF96_05500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
UPG69281
LinkDB
All DBs
Position
1211919..1215875
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD
LAELEAEGAKADVRRKVRDGADREMRRMRDAAQRELDGLEEIWDKFVKLAPGDLIIDEKL
YRQLEERYGEYFQGSMGAEAIKKLLETFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLKEGAAGEYT
AANGDDVERGVYSTPAEAIMAVDRGVLTVQSRIKVRLTDQRPPADIEAEQFPDGWKYGSP
WDIETTLGRVLFNELLPIEYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDSLVEIWKQA
TEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGITTTI
AEKQADGTLIRDAHVETSTYARTLAQDAVDADGNVIVERGHDLGDPAIEALLAAGITQVK
VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITLIPDDGSEEVVIDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVTEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggcctggccacggccgacgacatc
cacaactggtcatacggtgaggtcaagaagccggagacgatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggcccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgcggtcgac
gacgagctccggcacaacgagctctcgacgctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgtcgacctcaacgagcgtcagcagaagctcgagcaggat
ctcgccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgacggt
gccgaccgcgagatgcgtcgtatgcgcgacgccgcccagcgtgagctcgacggtctcgag
gagatctgggacaagttcgtcaagctcgccccgggcgacctcatcatcgacgagaagctc
taccgtcagctcgaagagcgctacggcgagtacttccagggttcgatgggtgccgaggcg
atcaagaagctcctggagaccttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgcgcgctcaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggttctcgacgccgttccggtgatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgtggccgtccggtcaccgggccgggcaaccgcccgctgaag
tcgttgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgtggtctgccgaagttgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccaggcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
cccgcggtgtgggacgtcctcgaagaggtcatcgccgagcatccggtgctgctgaaccgt
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcgtcgggccgtccgctcgccatgccgcgtctggac
atggtgaccggtctgtactacctgaccaccctcaaggagggtgcggcaggcgagtacacc
gcggccaacggcgacgacgtcgagcgcggcgtgtactcgaccccggccgaggccatcatg
gccgtcgaccgcggtgtgctgaccgtgcagtcgcgcatcaaggtgcgtctgaccgaccag
cgtccgccggccgacatcgaggccgagcagttccccgacggctggaagtacggctcgccg
tgggacatcgagaccacgctgggccgggtgctgttcaacgagctgttgccgatcgagtac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctgaaggacgtcggcttc
tactgggccacccgttcgggtgtcacggtctcgatggccgacgtgctggtgccgccgcag
aaggcggagatcctcgacaagtacgaggagcgggccgacggtctggagcgcaagttccag
cgcggtgccctcaccccggacgagcgtcgtgactccctcgtggagatctggaagcaggcg
accgaagaggtcggcgcggccatggaggcgcactacccggacgacaacccgatcccgatg
atcgtgaagtcgggtgcggcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgtggccgagtacttcatcaacacgcacggtgcccgaaagggtctggcc
gacaccgcgcttcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgtggcatcaccacgaccatc
gccgagaagcaggccgacggcacgctcatccgtgacgcgcacgtcgagacctcgacctac
gcccgcacgctggcgcaggacgcggtcgacgccgacggcaacgtcatcgtcgagcgcggt
cacgacctgggcgacccggccatcgaggccctgctcgccgccggcatcacgcaggtgaag
gtccgctcggtcctgacctgtgggaccggcaccggtgtgtgtgcgatgtgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgtgtccaagagctcttcgaggcccgcgtccccaag
ggcgtggcaccgatcgcggaggtctccggccgggtgcgcctcgaggacgacgaccgcttc
tacaagatcaccctcatcccggacgatggttcggaagaggttgtcatcgacaagatctcg
aagcgtcagcgtctgcgcgtgttcaagcacgacgacggttccgagcggctcctcgccgac
ggtgaccacgtcgaggtcggccagcagctcatggagggctcggccaacccgcacgaggtg
ctccgcgtcatgggtccccgtcaggtgcagatccacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgtcagatg
ctgcgtcgcgtgacgatcatcgaccacggttcgaccgagttcctgcccggttcgctcgtc
gagcgcgccgagttcgaggcggccaaccgtcaggtcgtgaccgagggtggcgagcccgca
gccggacgtccggtgctgatgggtatcaccaaggcctcgctggcgaccgagtcgtggctg
tcggcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcggcgatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggtaagttgatcccggccggt
accggtatcaaccgctaccgcaacatccaggttcagccgaccgaagaggctcgtgccgcg
gcgtacgcggtgccgtcgtacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggtgccgctggacgactacgggttctccaacgactaccggtag
DBGET
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