Gordonia hongkongensis: MVF96_05995
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Entry
MVF96_05995 CDS
T08182
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MVF96_05995
09124 Replication and repair
03420 Nucleotide excision repair
MVF96_05995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghn03021
]
MVF96_05995
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_05995
Enzymes [BR:
ghn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVF96_05995
Transcription machinery [BR:
ghn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MVF96_05995
DNA repair and recombination proteins [BR:
ghn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MVF96_05995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
UPG69368
LinkDB
All DBs
Position
complement(1324020..1325696)
Genome browser
AA seq
558 aa
AA seq
DB search
MERVTDGPLIVQSDKTLLLEVDHPDAAAARAAIAPFAELERAPEHVHTYRVTPLALWNAR
AAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLVKHPAHGLTLVSLDQAVLI
EVMRNKKVAPMLGARIDDDTVIVHPSERGRLKQVLLKVGWPAEDLAGYVDGEAHAIDLAQ
DDWQLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQW
KRELIARTTLTEEEIGEYSGERKEIRPVTIATYQVMTRKSKGEYKNLDLFDSRDWGLIIY
DEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW
IAPADCVEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILDKHRGQQTLIIGA
YIDQLEELGRELDAPVIQGSTKNKEREVLFDRFRSGELQTLVVSKVANFSIDLPEASVAV
QVSGTFGSRQEEAQRLGRLLRPKRDGGQAHFYSVVSRDTLDADYAAHRQRFLAEQGYAYR
ITDADDLLGPTIGEGSAG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgaccgatggacccctgatcgtgcaatccgacaagacgctgctgctcgag
gtggatcaccccgacgccgcggcggcgcgcgcggcgatcgcacccttcgccgaactcgaa
cgcgcccccgagcacgtccacacctaccgggtcaccccgctcgcactgtggaacgcccgc
gccgcaggtcacgacgccgaacaggtcgtcgatgcactcgtgacgtactcgcggtacgcg
gtgccccagccgctgctgatggacgtcgtcgacaccatgggccggttcggtcgcctgcaa
ctggtcaagcatccggcgcacgggttgaccctcgtcagcctcgaccaggccgtcctcatc
gaggtgatgcgcaacaagaaggtcgccccgatgctgggtgcgcgcatcgacgacgacacg
gtcatcgtgcacccgtccgagcggggccgcctcaagcaggtgctgctgaaggtcggctgg
ccggccgaggacctcgccgggtacgtcgacggtgaggcccacgccatcgacctcgcccag
gacgactggcagctgcgtgactaccaggagatggcagccgactcgttctgggccggcggc
tcgggtgtggtggtgctcccctgtggtgccggcaagacgatggtcggtgcggcggcgatg
gccaaggccggcgcgacgacgctgatcctggtgaccaacacggtcgccggccgccagtgg
aaacgtgaactcatcgcgcgcacgacgctcaccgaggaggagatcggcgagtactccggc
gagcgcaaggagatccgtcccgtcaccatcgccacgtaccaggtgatgacgcggaagtcg
aagggcgagtacaagaatctcgacctgttcgactcccgcgactggggcctgatcatctac
gacgaggtccacctcctccccgcccccgtcttccggatgaccgccgacctgcaatcgcgt
cgtcgactcggcctcaccgcgaccctggtccgcgaggacggccgcgagggcgacgtcttc
agcctcatcggacccaagcgctacgacgccccgtggaaggacatcgaggcacagggctgg
atcgcgccggccgactgcgtcgaggtccgggtgaccctgaccgacgaggaacgcctgcag
tacgcggtcgccgagcccgaggagaagtacaagctctgctcgacggcccacacgaaggtc
aacgtggtcaaggcgatcctcgacaagcaccggggtcagcagaccctgatcatcggcgcc
tacatcgaccagctcgaggaactgggccgcgaactcgatgccccggtgatccagggatcg
acgaagaacaaggaacgcgaggtcctgttcgaccggttccgctccggcgagttgcagacc
ctcgtcgtgtcgaaggtggcgaacttctccatcgaccttcccgaggcgtcggtcgcggtg
caggtgtcggggacgttcgggtcacgccaggaggaggcccagcgcctcggccggttgctg
cgaccgaaacgcgatggcggacaggcacatttctactcggtggtgtcgcgcgacaccctc
gacgccgactacgcggcccaccgccagcggttcctcgccgaacagggatacgcctaccgg
atcaccgacgccgacgacctcctgggcccgacgatcggtgagggttcagccggctga
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