Gordonia hongkongensis: MVF96_10100
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Entry
MVF96_10100 CDS
T08182
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVF96_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghn03019
]
MVF96_10100
03009 Ribosome biogenesis [BR:
ghn03009
]
MVF96_10100
Enzymes [BR:
ghn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MVF96_10100
Messenger RNA biogenesis [BR:
ghn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MVF96_10100
Ribosome biogenesis [BR:
ghn03009
]
Prokaryotic type
rRNA processing factors
MVF96_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
UPG70081
LinkDB
All DBs
Position
2234475..2237996
Genome browser
AA seq
1173 aa
AA seq
DB search
MTDNGSPADANAASESAEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR
DLAKAVAERVRSGVDETGETPPQAAPAGDAALPDAAADTTPAEAPADTPPTDAAQAEAAS
VEAAPTEAVSAEAAPADDAPTAEVASTEDAAQTTADDSPAAPTAAPTLFSAAQYDAPVAT
PAAETDASTGAQPLFLQPQAPADKPRAARSGRAKTRAETGAKDESADTPADESVAAETAT
STSADAPARSDRSRADDSTAADRDADVSTPDESGADDADDSNADDSNADDSGSGRSRRRR
RGRRGRGRGRGDQGGDSDSDTDESDAEASDADESTGDGATDADTDSEDTTSDESAEDSRS
EEGRPSGKRTRRRSRRSGADKAEDSEASGATGDRADESGDDADSADAEDASDDDDSGDSS
STRRRRRRRRRKGGGEPDEASPDDPPNTVVHEREPRSKRARDEVQGISGSTRLEAKRQRR
RDGRDAGRRRPPILTESEFLARREAVDRVMVVRERSANSRISGNDGHEHAAVEDYTQVAV
LEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAA
GLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRK
LPDVERKRLKQILAKLVPDEAGVIIRTASEGVSAEELGADIARLESQWKSIDEAVAQAKK
GGSSSPKPLYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVASDLMERVEKF
DKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGN
LEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRH
QVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGIIVHANPVEVKTDDSSRGDGAGS
KRSRRGKKKADAQPEAVAPAVAPAHKPAEHPMFRAMAAHAHDDEHDQESGATTDGDTTSR
VEDAAKPVVEGSSPQQTADSRVDTAVAEPTETLPYPVATEPAETDSAGTDSAGTESAESE
PAAVETVPEPVGSATDGQAPAAARRRRRVVRRPAQTTTPPDTVVMTAADVAAETPVTTSG
PVSAANSEAAVAVRRRPRKRSAGRPAGPPPADD
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcgccggctgacgcgaacgcagcgtcggaatcggcggaagaattt
cccagcaaacttcgtgtgcacgccctggcccgcttcctgggcctcacgagtcgacaggtt
ctggctcacctggcgaatctcggcgtgcagacccgcagcccgcaatccagcgtcgatcgt
gacctggcgaaagccgtggccgaacgggtgcgctccggcgtcgacgagaccggcgagacg
ccgccgcaggccgccccggccggcgacgcggctctgcctgacgccgctgccgacacgacg
ccggccgaggcccctgccgacaccccgccgacggacgcggcacaggccgaggcggcatcg
gtcgaagccgcaccaaccgaggcggtgtccgccgaagcggcgcccgccgacgacgcaccg
acggccgaagtcgcatcgaccgaggatgctgcacagaccaccgccgacgactcgcccgcg
gcaccgaccgcagccccgacgttgttctcggccgcccagtacgacgcaccggtggcgacc
ccggccgcggagaccgacgcctcgaccggcgcgcagccgctgttcctgcagcctcaggcc
ccggccgacaagccccgcgccgcccgctcgggtcgtgcgaagacccgcgctgagacgggc
gcgaaggacgagtcggcggacaccccggcagacgagtccgtcgctgccgagaccgcgacc
tcgacatcagcggacgcgcccgcccgctcggacaggtcgagagccgatgattcgactgcg
gccgaccgggacgccgacgtctcgaccccggacgaatccggcgccgacgacgccgatgat
tccaacgccgatgattccaacgctgatgattccgggtcgggccggagtcgccggcgtcga
cgcggacgtcgtggacgcgggcgcggtaggggagaccaggggggcgactctgattcggac
acggatgagtccgacgccgaggcgtccgatgccgacgagtcgaccggtgacggggcaacc
gatgccgacacggactcggaggacaccacgtccgacgagtcggccgaggactcgcgctcg
gaggagggccgtccgtcgggcaaacgcacccgccgccgcagccgtcgttcgggtgcggac
aaggcggaggactccgaggcgtccggcgccacgggcgaccgcgccgacgagtccggtgac
gatgccgactccgccgacgccgaagacgcatccgatgacgacgactccggtgactcctcg
tcgactcgccgccgccgtcgccgtcgccgtcgcaaaggtggcggcgaacccgatgaggcg
tctcccgacgatccgccgaacacggtggtgcacgagcgcgagccgcgcagcaagcgcgcc
cgcgacgaggtgcagggcatctcggggtcgacccgactcgaagccaagcgtcagcgccgg
cgcgacgggcgcgatgccggccggcgtcgtccgccgatcctgaccgagtcggagttcctg
gcacgccgtgaggcggtcgaccgcgtcatggtcgtccgagagcgcagcgcgaacagccgc
atttccggtaacgacgggcacgagcacgccgcggtcgaggactacacgcaggtcgcggtc
ctcgaggacggtgtcctcgtcgagcatttcgtgacgaccgcgacgtcgtcgtcgatggtc
ggcaacatctacctcggacgcgtccagaacgtccttccggggatggaagccgcattcgtc
gacatcggtcgcggacgcaacggcgtgctctacgccggtgaggtcaactgggacgctgcc
ggactcgacggcggttcgcgcaagatcgagcaggcgctcaagcccggcgacaacgtgctc
gtccaggtcagcaaggacccggtgggtcacaagggcgcccgtctgaccacgcagatctcc
ctcgccggccgctacctggtgtacgtgcccggcggttcgtcgaccgggatcagccgcaag
ctgcccgacgtcgagcgcaaacgtctcaagcagattctggcgaagctcgtccccgacgag
gccggggtcatcatccgcaccgcgtcggagggagtcagcgccgaggaactcggtgccgac
atcgcccgcctcgagtcgcagtggaagtccatcgacgaggcggtggcccaggccaagaag
ggtgggtcgtcgagcccgaagccgctgtacgaggagcccgacctcctggttcgcgtcgtc
cgtgatctgttcaacgaggacttcaagaagctcgtcgtcgaaggtgacaaggcctggaac
ctggtcgagggttacgtcagctcggtggcctcggatctcatggagcgggtcgagaaattc
gacaagccgcacgccgacgcgccggattcgttcgtcgtgcaccgcatcgacgagcagctc
gcgaaggcgctcgaccgcaaggtgtggctgccctccggcggcacgctgatcatcgagcac
accgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccggctcgggtggcaac
ctcgaggagacggtgacgcgcaacaacctcgaagccgccgaggagatcgtgcggcagatg
cggttgcgcgacatcggcgggatgatcatcgtcgacttcatcgacatggtcctcgagtcg
aaccgggatctggtgctccgcaggctcaccgaggcgctcgctcgtgatcgcacccgtcac
caggtgtccgaggtgacctcgctgggcctcgtccagatgacacgtaaacgtctgggaacc
ggtctgctggaagcgttctcgaccacctgcaccgcctgcagcggtcgaggcatcatcgtg
cacgcgaatcccgtcgaggtgaagaccgacgactcttcgcgtggcgacggtgccggttcg
aagcggtcccgtcgaggcaagaagaaggccgacgcgcaaccggaggcagtcgccccggcc
gtcgcgcccgctcacaagccggccgaacacccgatgttccgggcgatggcggcgcacgcg
cacgacgacgaacacgaccaggagtccggcgcgaccaccgacggtgacaccacgagtcgg
gtcgaggatgcggcgaaacccgtcgtcgagggttcgtcgccgcagcagacggccgacagc
cgggtggacaccgctgttgccgagccgaccgagaccctgccgtatccggtggcgacggaa
ccggctgagacggattcggctggaacggattcggctgggacggaatcggctgagtccgag
cctgcggcggtcgagacggtgcccgagccggtcggctcggccaccgacggacaggctccg
gcggccgcacggcgtcgtcggcgggtcgtccggcgtccggcgcagacgaccactccgccc
gacaccgtggtgatgaccgcggcggatgtcgccgcggagacgccggtgacgacctcgggt
ccggtctccgccgctaactcggaggcggcggtcgcggtacggcgccggccgcgcaagcgc
agcgcgggccgtcccgcgggaccgccaccggccgacgactga
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