Gordonia hongkongensis: MVF96_10860
Help
Entry
MVF96_10860 CDS
T08182
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ghn
Gordonia hongkongensis
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghn03019
]
MVF96_10860 (hrpA)
Enzymes [BR:
ghn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MVF96_10860 (hrpA)
Messenger RNA biogenesis [BR:
ghn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MVF96_10860 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
T2SSE
NACHT
SLFN-g3_helicase
FtsK_SpoIIIE
PhoH
TsaE
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UPG70213
LinkDB
All DBs
Position
complement(2389141..2393127)
Genome browser
AA seq
1328 aa
AA seq
DB search
MSAPSSSPDPSPSPPDTAASDISRSDLLRALDDVGLVDADRLRRRIDRLAARPDAAKWRQ
LVADVDKARARLDRRRATVPILRFPDELPVSAARDEIAEAIRNHQVVVVAGETGSGKTTQ
LPKICLELGRGIRGSIGHTQPRRIAASSVAKRIADETDTELGDAVGYSVRFTDRSGADTL
VRVMTDGILLREIATDPMLRRYDTLIIDEAHERSLNIDFILGYLRRLLPRRPDLKVIITS
ATIEPARFARHFSTPKTSVPVIEVSGRTYPVEIRYRPLSLRERPDDGDDAGGGEHADLDQ
IQGIDAAVDELWAGGRGDILVFLPTERDIRETAEALRRRTGGSKGPGAEIVPLYARLSIA
EQQKVFSPSGGRRIVLATNVAETSVTVPGIRYVIDTGTARISRYSTRTKVNRLPIEPVSQ
ASARQRAGRCGRVAPGVCIRLYSENDFDSRPAFTDPEILRTNLAAVILQMTSLKLGEIAE
FPFVQPPDDRAIRDGMGVLTELGAITVPREGGPPRLTPIGRSMSRIPVDPRVARMLIAGH
ELGCLDHLLVIAAAMSLPDPRERPAEHREAADAQHRRFVVPQSDFLSYVELWRYLGEQRK
ELSGSRFRRMCEREYLHFLRIREWQDLHRQLTEIVKDLDWSVAPTELDADAVHRSILSGL
LSNIAARNTEGREFTGARNTTLTIFPASPLAKKPPAFIMAAEVLETSRLFAHTVAGIDPL
WAEKLAGDLVKRTHSEPHWSAKRGAAMAYERVTLYGVPLVARRRVDYGPIDPVVSRELFI
RHALVEGDWRTQHAFFDRNRKLLEAASDVENRTRTRGLVITEDQLFEFYDQRLPADVTSA
RHFDTWWKKARRAEPDLLDLRPEDVTGGTDVAPTDYPGAWQQGDTRLELRYRFEPGAPDD
GVTVVIPQALLPHVRPAGFDWSVPGMRAELATALVKSLPKQLRKSMSPAQRFAELALGRL
TPRKEPLTIGLARELSAITGMRVTAGDFDTDRVPPHLRMHFAVADDSGRIVARADSLPEL
QQTGTPAAPKTVSRNLYKTWTADGIGSLAEQTTVDVAGQRLTRYPTIDVVSDEKGHARGV
VVVDAASPETRDRLLRRGIVALLDLAIPPLHKRIAGSLSPVERLALSQSPYSTIEALLAD
CTRRATRDTVADIDDAELAAVRSPQSFSALLERIRPRVAAAAPDYFSLAVAALERMAPLR
AAIDRHAGSLAADDVAEQVAHLVFDGFVAATARRHLEHLPRYLDGAQARLEALPASAARD
QAGVAAVDRVVERWAQRLEQVPEHRRAVVDDEAQWLVEELRVGLFAQRLGTAFPVSEKRV
LRALDRLG
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccgtcctcgtcacctgacccgtccccctctccaccggacaccgctgcatcg
gacatctcccgctcggatctgcttcgcgcactcgacgacgtgggcctcgtcgacgccgac
cggttgcgtcgtcgcatcgaccggctcgccgcgcgcccggacgccgcgaagtggcgacag
ttggtcgccgatgtcgacaaggcacgcgcccgtctcgaccggcggcgcgcgaccgtgccg
attttgcgcttccccgacgaactaccggtctccgccgcacgcgacgagatcgccgaggcg
atccgcaaccaccaggtcgtggtcgtcgcgggcgagaccggctcgggcaagaccacccag
ctccccaagatctgcctcgaactcgggcgtggcatccgcgggtcgatcgggcacacccag
ccccggcgcatcgccgcgagctcggtcgccaagcgcatcgccgacgagaccgacaccgaa
ctcggcgacgcggtgggctactccgtccggttcaccgaccggtcgggcgccgacaccctc
gtccgggtcatgaccgacggcatcctgctccgcgagatcgccaccgaccccatgctgcgc
cgctacgacaccctcatcatcgacgaggcccacgagcgcagcctcaacatcgatttcatc
ctcggctatctgcgccgcctgctgccccgacgccccgatctgaaggtgatcatcacctcg
gcgacgatcgaaccggcgcgcttcgcacggcatttcagcacgccgaagacctcggtcccg
gtcatcgaggtatccggacgcacctatccggtcgagatccggtaccgaccgctgagcctg
cgggaacgccccgacgacggggacgacgccggcggcggcgaacatgccgacctcgaccag
atccagggcatcgacgccgccgtcgacgaactgtgggccggtggccgcggcgacatcctc
gtgttcctgcccaccgaacgggacatccgagagaccgccgaggcgctccgtcgacgaacc
ggcggcagcaagggtcccggtgccgagatcgtgccgctctatgcgcgactgtcgatcgcc
gagcagcagaaggtgttctccccctccggcggacgccggatcgtgctggcgaccaacgtc
gccgaaacgtcggtgaccgtgcccggcatccgctacgtcatcgacaccggcaccgcccgt
atcagtcggtactcgaccaggaccaaggtcaatcgtcttcccatcgaaccggtctcacag
gccagtgcccggcagcgggccggtcgatgcggtcgtgtcgccccgggcgtctgcatccgt
ctctacagcgagaacgacttcgactcccggccggccttcaccgacccggagatcctgcgc
accaacctcgcggcggtcatcctccagatgacctcgctgaaactgggtgagatcgccgag
ttcccgttcgtccagccgcccgacgaccgcgcgatccgcgacggtatgggtgttctcacc
gaactcggcgccatcaccgtcccgcgcgagggcgggcccccgcgactgaccccgatcggc
cggtcgatgtcgcggatcccggtcgatccccgggtcgcccggatgctcatcgccggacat
gaactgggttgtctcgaccaccttctcgtgatcgccgccgcgatgtcgctccccgatcca
cgggaacggccggccgagcaccgtgaggccgccgacgcccagcaccggcgcttcgtcgtc
ccgcagtcggacttcctgtcctacgtggagctgtggcggtacctcggcgaacagcgcaag
gagttgtccggcagccgctttcgacgtatgtgcgaacgggagtacctccacttcctgcgc
atccgggagtggcaggacctccaccggcagctgaccgaaatcgtcaaggacctcgactgg
tcggtcgcgcccaccgaactcgacgccgacgccgtccaccgatccatcctgtccgggttg
ctcagcaacatcgccgcccgcaacaccgagggccgcgagttcaccggtgcgcgcaacacc
acactgacgatcttccccgcctctccgctcgccaagaagccgcccgccttcatcatggcg
gccgaggtcctcgagacgtcgcgcctgttcgcccacaccgtcgccgggatcgatccgctg
tgggccgagaaactcgccggtgatctggtgaagcgcacccacagcgaaccgcattggtcg
gcgaaacgcggagcggcgatggcctacgaacgcgtgaccctgtatggggtcccgctcgtc
gcccgccggcgcgtcgactacggccccatcgacccggtggtctcgcgagagctgttcatc
cggcacgctctcgtcgagggcgattggcggacgcagcacgccttcttcgaccgcaatcgc
aagcttctcgaggccgcctcggacgtcgagaaccgcacgcgcacccggggtctggtgatc
accgaggaccagctcttcgagttctacgaccagcggctaccggccgacgtcacctccgct
cggcacttcgacacctggtggaagaaggcccgccgggccgaaccggatctgctggatctg
cgccccgaggacgtcacgggaggcaccgacgtcgccccgacggactatcccggcgcctgg
cagcagggcgacacccgactcgaactgcgctaccggttcgaaccgggcgcacccgacgac
ggcgtcaccgtcgtgatcccgcaggcactgctcccccatgtccgaccggccggcttcgac
tggtcggtcccgggcatgcgcgccgaactggccaccgcactggtcaagtcgctgccgaaa
cagctccgcaagagcatgtcgcccgcgcagcggttcgccgaactcgcgctcggccggctc
accccgcgcaaggagccgctcaccatcgggctggcgcgcgagctctcggcgatcaccggg
atgcgggtgaccgcaggcgatttcgacaccgaccgggtaccgccgcacctgcgcatgcat
ttcgcggtggccgacgactccggacggatcgtcgcccgcgccgactcgttgcccgaactc
cagcagaccggaacgcccgcggcgccgaagacggtgtcgcgcaacctgtataagacctgg
accgccgatgggatcggctcgctcgccgagcagacgacggtcgatgtcgcggggcagcgg
ctgacccggtacccgacgatcgacgtggtctccgacgagaagggccacgcgcggggcgtc
gtcgtcgtcgatgcggcgagcccggagacacgggaccgcctcctgcgacgcgggatcgtc
gccctcctcgacctcgcgatacctccgctgcacaagcggatcgccggctcgctgagtccg
gtcgaacgactcgccctgagccagagcccgtactcgaccatcgaggcactgctcgccgac
tgcacccgccgggcgacccgggacacggtcgccgacatcgacgacgcagagctcgccgcg
gttcgctcaccacagtccttctcggcgctgctcgaacggatccggccacgggtcgccgcg
gccgcaccggactacttctcgctggccgtcgcggccctcgaacggatggccccgctgcgg
gcggcgatcgaccggcacgccggttcgctggctgccgacgacgtcgccgaacaggtcgcc
cacctcgtgttcgacggattcgtggcggccaccgcgcgacgccacctggagcatctgccg
cgctatctcgacggcgcgcaagcacgtctggaggcactacccgcgtccgcggcacgcgac
caggccggggtggccgccgtcgatcgcgtcgtcgaacggtgggcccaacgcctcgaacag
gtacccgagcaccggcgggcggtggtcgacgacgaagcgcagtggctcgtcgaggagttg
cgcgtggggttgttcgcccagcgtctcggtaccgcgttcccggtgtccgaaaaacgggtc
ctacgagctctggaccgactcggctga
DBGET
integrated database retrieval system
