Gordonia hongkongensis: MVF96_11045
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Entry
MVF96_11045 CDS
T08182
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ghn
Gordonia hongkongensis
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghn03016
]
MVF96_11045
Enzymes [BR:
ghn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MVF96_11045
Transfer RNA biogenesis [BR:
ghn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MVF96_11045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
LPG_synthase_C
Motif
Other DBs
NCBI-ProteinID:
UPG70244
LinkDB
All DBs
Position
complement(2432814..2434103)
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AA seq
429 aa
AA seq
DB search
MNDSAPGDAAENPIEPDPAPEVTPLLRPADGVPPVLATATEFADAAAALAAGDGPIAVDT
ERASGYRYSQRAYLIQIKRRGSGSFLLDPIGDPGALAPVIDAMRGPEWVLHAADQDLPCL
RELGFECVELYDTELAGRLLGLAKVNLAAMVAEFLGLGLLKGHGAADWSRRPLPDEWLNY
AALDVEVLVELRDAMDAALAEAGKDGWAREEFAYVLGRPPAPPRTDRWRKTSNVHTVKST
RALAAVRELWTAREELAQRRDVAPGRVLPDTAIVNAATVNPQSIAELTKLPVFGGPRQRR
QAGIWMSALQRAREIPDSKLPSRKSTGPGLPPVSRWDQRNPEAAARLQAVRPVLKQIAED
HTLPVENLLAPDVMRQLCWDGLPEPITTEALNAHLAAAGARTWQRTLCAEALTEALLDAA
RPGPTAAAE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgactccgcccccggggatgcggccgagaacccgatcgagccggaccccgcgccg
gaggtcaccccgttgctccggccggccgacggcgtgcccccggtactggcgaccgccacc
gaattcgccgacgcggcagccgctctggcagccggcgacgggccgatcgccgtcgacacc
gaacgcgcgtcgggctaccggtactcgcaacgcgcctatctgatccagatcaaacgacgc
ggatcggggagcttcctgctggacccgatcggtgatcccggcgcgctggcgcccgtcatc
gacgcgatgcgcggaccggaatgggtgctgcacgcggccgatcaggacctcccgtgcctt
cgcgaactcggtttcgagtgcgttgaactgtacgacaccgagctggccggacgcctcctg
ggcctggccaaggtcaacctcgccgcgatggtggcggagttcctcgggctgggactcctc
aagggacacggcgccgccgactggtcgcgccgcccgctgcccgacgaatggctgaactac
gccgcgctcgacgtcgaggtcctcgtcgaactgcgcgacgccatggacgccgcactcgcg
gaagcgggcaaggacggctgggcgcgagaggaattcgcgtacgtcctgggccggccaccg
gcaccgccgcgcaccgaccggtggcgcaagacgtcgaacgtgcacaccgtgaagtccacc
cgcgcgctcgccgcggtccgcgaattgtggaccgcgcgtgaggaactggcgcagcgtcgg
gatgtcgcgcccggacgtgtcctgcccgacacggccatcgtcaacgccgcgaccgtgaac
cctcagtccatcgccgaactcaccaagctgccggtcttcggcggcccgcgtcagcgccgt
caggccgggatctggatgtccgcgctgcagcgggcgcgcgagatccccgacagcaagctg
ccctcgcggaagtcgaccggaccgggcctgcccccggtcagccggtgggatcagcgcaac
ccggaggccgcggcgcggctgcaggcggtccggccggtgctcaaacagatcgccgaagac
cacaccctgccggtggagaacctcctcgcacccgacgtgatgcgacagctgtgctgggac
gggttgccggaaccgatcacgaccgaggcgctcaatgcacatctggccgccgccggcgcc
cgcacgtggcaacggacgctctgtgcggaggccctgaccgaggccctcctcgacgccgcc
cgaccagggccgacggcggccgccgagtag
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