Gordonia hongkongensis: MVF96_16875
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Entry
MVF96_16875 CDS
T08182
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MVF96_16875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghn03000
]
MVF96_16875
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_16875
Enzymes [BR:
ghn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MVF96_16875
Transcription factors [BR:
ghn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MVF96_16875
DNA repair and recombination proteins [BR:
ghn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MVF96_16875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF7437
HHH
Motif
Other DBs
NCBI-ProteinID:
UPG67113
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All DBs
Position
3706940..3708493
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AA seq
517 aa
AA seq
DB search
MSTGTATEPDTGGFAPDFDRCFRAVQARDARFDGQFFVTVRTTGIYCRPSCPAQTPRPAN
VAFVLTAAAAQQQGFRACRRCAPDAVPGSPLWNINADMSARAMRLIADGVVEREGVDGLA
ARLRYSPRHLTRVLTRHLGAGPLALARAHRATNARVLIQCTTMPMTDVAFAAGFASVRQF
NDTVRAVFGLTPTELRRLHSRRKDAIGTDSAPGSVTLRLPFRAPYRWPWMRWFLDAHAVA
GVESVVDAPDSPHGWRYRRVLALPHRTASAEVEPQDDHAVVALHGLDMRDVGVAVNRIRR
LLDLDADITAAEDALAADATMQRLLRRAPGLRAPGSLDPAETIIRTMLGQQVSLAAARNQ
VNRLVEALGEPVGDAFATPSETATTVDGPASKSFPTPGVIAARGHEVLRGPRRRIDAVIG
VAAALAEGRVEPHVGVDASDLRAQLLELPGIGPWTADIVTMRVTGDPDVLLTNDLVVVRA
AADLGIDLRDTRHWAPWRSYATMHLWRHRLDAAGQAV
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaggcaccgcaacagaacccgacaccgggggtttcgcgccggacttcgaccgg
tgttttcgcgcagtgcaggcccgcgacgcccgcttcgacggtcagttcttcgtgacggtc
cgcaccaccggcatctactgccgtccgtcgtgtccggcacagaccccccggcccgccaac
gtggcgttcgtcctcactgcggcggccgcccagcagcagggtttccgtgcttgccgacgc
tgcgcgcccgacgccgttccggggtccccgctgtggaacatcaacgccgacatgtcggct
cgcgcgatgcggctcatcgccgacggcgtcgtcgagcgcgaaggggtcgacggactcgcg
gcgcgtctgaggtattcaccccggcacctcacccgcgtgctgacccggcatctcggagcc
gggccgctcgcgctcgcccgagcacatcgcgccaccaacgcccgcgtgctcatccagtgc
acgacgatgccgatgaccgacgtcgcgttcgccgccggattcgccagcgtgcgccagttc
aacgacaccgtccgcgcggttttcgggctcacccccaccgagcttcgacgcctgcacagc
cgcagaaaggatgcgatcggcaccgattccgccccgggaagcgtcaccctgcgcctgccg
ttccgcgcgccgtatcgctggccatggatgcgctggttcctggacgcgcacgccgtggcc
ggggtcgaatccgtcgtcgacgccccggacagtccgcacggctggcgttaccgccgggtc
ctcgccctaccccaccgaacagcgtcggcggaggtggagccgcaggacgaccacgccgtc
gtcgccctccacggactggacatgcgtgacgtgggggtcgcggtcaaccggatccggcgt
ctgctcgacctcgacgccgacatcaccgcggccgaggacgcactggccgccgacgccacg
atgcagcggctgctgcgccgggcgccgggcctccgtgcgcccggcagcctcgacccggcc
gagacgatcatccggaccatgctcggtcagcaggtgagtctcgccgccgcgcgcaaccag
gtgaaccggctcgtcgaggccctcggcgaaccggtcggcgacgccttcgccaccccgtcc
gagacggcgacgacagtcgacggtccggcgtcgaagtccttcccgacgccgggtgtcatc
gccgcccgtggacacgaggtcctccgcggcccgcggcggcggatcgatgccgtgatcggc
gtcgcggcggcactcgccgaaggtcgggtggaaccgcatgtgggggtcgatgcgtctgat
cttcgtgcccagcttctcgagttgcccggcatcggcccctggaccgccgacatcgtcacg
atgcgagtcaccggcgatcccgacgtcctgctcacgaacgacctcgtggtcgtccgggca
gccgccgacctcgggatcgatctgcgggacacgcggcactgggcaccgtggcgctcgtac
gcgaccatgcacctgtggcgacaccgactcgacgccgccggacaggccgtgtga
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