Gordonia hongkongensis: MVF96_17385
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Entry
MVF96_17385 CDS
T08182
Name
(GenBank) DEAD/DEAH box helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03420
Nucleotide excision repair
ghn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MVF96_17385
03430 Mismatch repair
MVF96_17385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_17385
Enzymes [BR:
ghn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVF96_17385
DNA repair and recombination proteins [BR:
ghn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MVF96_17385
MMR (mismatch excision repair)
Other MMR factors
MVF96_17385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UPG67201
LinkDB
All DBs
Position
complement(3805890..3809294)
Genome browser
AA seq
1134 aa
AA seq
DB search
MTDLQDRTERPMVGAKSLAAALGLPDPTPEQVAVIEAPMEPMLVVAGAGAGKTETMASRV
VWLVANQLVAPDEILGLTFTRKAASELGARIRRRLSMLAGSPALRNWDPDGALAARLRGA
DPEVSTYHAYAGRLIADYGLLLPVEPSSTLLTETELWQLAFSLVSAWPGELNTKKVPASV
TEAVLKLYGEMSEHLVDIADLAQAGSTLYELVDTLPKGPKQRDKPTQALLKVQEVIDERR
ELIPMVIALGETMRAQSALDFGSQMSLAARLVVSNSEVVTAERTAFRAVLLDEYQDTGHS
QRVLLSTLFGGHGRAPVAVTSVGDPIQSIYGWRGASAANLPRFARDFPRPDGTPARRLEL
LTSWRNSAQGLRLANQISAELRRRGIPVSVLRPRPDAPDGTASIALTETVLDERNWIADA
IEERYQAAEAADVAPPTTAILVRRNEDSAPLAAELESRGIPTEVVGIGGLLHVPEIEDIV
ATLRVMADPMAGTAVMRLLTGARWRLGAKDLAALWRRATNLAAESFAEAGGVVTSREALD
AALDAVLPTEIVDRAGIADAVVDPGEPTDYSPEGYARIRAFGAQLESLRRRIGQPLPELV
ADVENTIGVGVEAQIRARRMRGAITGREHLDAFADYVSHYADRPGANLPGLLAFLDAAET
IEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVAIPHLAKGIFPSAKADTTWLGSARELP
ADLRGDLAIPAEAADGAPEGFPILKIDTVADRKQLEDALTDHKAAIGERRLEEDRRLLYV
ALTRARHDLLISAHHWSETGDKPRGGSDFFDELMTGIDEAIADPSVDSTGLSIAVRTPPP
EPDSPNPLAERAIAAPWPRDPLAGRRDSVQRAADLVADAIAGRAAPALFDTPAAQSGPAD
AETPATPPADPADEIGAWEAEVSALLAEHHQANQALVEVSLPTHLSVSQLVELDADEAEF
ARRLRRPTPFRPNPMARRGTAFHAWVERWFGATRLLDIDELPGAADATASPDADLEELRA
AFLSSPWANRSPTEVEVPFETVIGGIVVRGRIDAVFAEKDGSWTVVDWKTGVIPEPARRE
SLFIQLAAYRLAWAQLAGVEPTKVRAAFHYVRDGHTLEADDLPDEATLAAKLAR
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctgcaggatcggaccgaacggccgatggtcggggcgaagtcgctggccgcg
gcgctgggtctgcccgatcccacgcccgagcaggtggccgtgatcgaggcacccatggag
ccgatgctcgtcgtcgccggagccggggccggcaagaccgagacgatggcctcacgcgtg
gtgtggctggtggccaaccagctcgtggcccccgacgagatcctcggactcaccttcacg
cgcaaggccgcgagcgaactcggcgcccgcatccggcgtcggctctcgatgcttgccggg
tcgccggcgctgcggaactgggatcccgacggcgcgttggccgcccgcctgcgcggcgcc
gaccccgaggtgagcacctatcacgcctacgccggccggttgatcgccgactacgggctg
ctgctgccggtggaaccgtcgtcgacgctgctcaccgagaccgagctctggcagctcgcg
ttctccctcgtctccgcgtggccgggcgagctgaacaccaagaaggtgccggcgagtgtc
accgaggcggtgctcaagctgtacggcgagatgtccgagcacctcgtcgacatcgccgac
ctcgcgcaggcgggttcgacgctgtacgaactcgtcgacaccctcccgaagggccccaag
cagcgtgacaaaccgacccaggcgctgctgaaggtccaggaggtcatcgacgaacgtcgc
gagctgatcccgatggtcatagcgctgggcgagacgatgcgcgcccagtccgcgctcgac
ttcggcagccagatgtcgctggcggcacggctggtggtgtccaattccgaggtcgtgacc
gccgagcgcaccgccttccgcgcggttctcctcgacgagtaccaggacaccggccactcg
caacgggtgttgctgtcgaccctgttcggcgggcacggccgcgcgccggtcgcggtcacc
tcggtcggcgaccccatccagtccatctacgggtggcgtggcgcctcggcggccaacctg
ccgcggttcgcgcgcgacttcccacgacccgacgggaccccggcccggcgcctcgaactg
ctcaccagctggcgcaactcggcccagggcttgcggttggcgaatcagatctccgcggag
ctccgacgccgcggtatcccggtcagtgtgctccggccgcgtcccgatgccccggacgga
acggcgtcgatcgccctgaccgaaacggttctggacgaacggaactggatcgccgacgcc
atcgaggaacgctaccaggcggccgaggccgcagacgtcgcgccgccgaccaccgcgatc
ctggtgcgccgcaacgaggattcggcgccgctggccgccgagctcgagagtcggggcatc
cccaccgaggtggtcggcatcggcgggctgctgcacgtcccggagatcgaggacatcgtc
gcgaccctgcgcgtgatggccgacccgatggccgggaccgcggtcatgcgtctgctcacc
ggggcccgctggcggctcggcgccaaggacctcgccgcgctctggcgtcgggccaccaac
ctggcggcggagagcttcgccgaggcgggcggggtggtcaccagcagggaagcgctcgac
gccgcactcgatgcggtgctgcccaccgagatcgtcgaccgggcgggcatcgccgacgcc
gtcgtcgaccccggcgaacccaccgactacagcccggagggttacgcccgcatccgggcg
ttcggtgcgcagttggagtcactgcgtcggcgcatcggacaaccgctgcccgaactcgtc
gccgacgtggagaacacgatcggggtcggcgtcgaggcgcagatccgggcgcggcgcatg
cggggtgcgatcaccggacgcgaacacctcgacgccttcgccgactacgtcagtcattac
gctgatcgtccgggagcgaatctgcctggactgctcgccttcctggatgctgccgagacc
atcgagaagggtctcgaaccgggccgcatcgaggtggccgaacagcgggtgcagatcctc
accgtgcatgcggccaagggcctggaatgggatgtcgtcgcgatcccgcacctggcgaag
gggatcttccccagcgccaaggccgacaccacatggttgggcagtgcgcgcgaactcccg
gcggacctgcgcggcgatctggcgatcccggccgaggcggccgacggtgcgccggagggg
ttcccgatcctgaagatcgacaccgtggccgaccgcaagcagctcgaggacgccctgacc
gaccacaaggccgcgatcggcgaacggcgactcgaggaggatcgccggttgctctatgtg
gcgctcacccgcgcccggcacgacctgctgatctcggcgcaccactggtcggagaccggc
gacaaaccccgcggcggttcggatttcttcgacgagttgatgaccggcatcgatgaggcg
atcgccgacccgagcgtcgactcgaccggtctgtcgatcgcggtgcggacgccaccgccc
gaaccggacagcccgaatccgttggccgaacgcgcgatcgcggcgccgtggccgcgtgat
ccgctcgcgggccgccgcgactcggtacagcgggcggccgacctggtcgccgacgccatc
gccggccgcgcggcgcccgcgctgttcgacacacctgctgcccagtccggccccgccgac
gccgagacccccgcaacgccaccggccgaccccgcggacgagatcggggcgtgggaggcc
gaggtgtcggccctgctcgccgagcatcatcaggccaaccaggcgctcgtcgaggtgtcg
ttgccgacccatctgtccgtcagtcagctggtcgaactggacgccgacgaggccgagttc
gctcgtcggctccgccggcccaccccgttccggcccaacccgatggcccggcgcggcacc
gcgttccacgcctgggtggaacgctggttcggggcgacacggctcctcgacatcgacgaa
ctgcccggcgccgccgacgcgaccgcgagtcccgacgccgatctcgaggaattgcgggcc
gcgttcctctcctcgccctgggcgaatcgcagcccgaccgaggtggaggtgcccttcgag
accgtcatcggcgggatcgtcgtgcgcggacggatcgacgcggtcttcgccgagaaggac
ggttcgtggacggtcgtggactggaagaccggtgtgatccccgaacccgcccgccgggaa
tcactcttcatccagctcgccgcgtaccgcctggcgtgggcgcagctggccggggtggag
ccgaccaaggtccgcgccgcgttccactatgtgcgcgacgggcacaccctggaggccgac
gacctgcccgacgaggcgaccctcgccgcgaagctggcccgctga
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