Gordonia hongkongensis: MVF96_20855
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Entry
MVF96_20855 CDS
T08182
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
ghn
Gordonia hongkongensis
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghn03021
]
MVF96_20855
Transcription machinery [BR:
ghn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MVF96_20855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
KORA
HTH_IclR
HTH_23
Sigma70_ECF
MarR
HTH_24
GerE
HTH_Crp_2
HTH_AsnC-type
DUF7343
HTH_3
HTH_Tnp_ISL3
HTH_26
Crp
HTH_AraC
YdaS_toxin
UPF0122
DUF134
VCPO_N
Motif
Other DBs
NCBI-ProteinID:
UPG67819
LinkDB
All DBs
Position
complement(4621590..4622453)
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AA seq
287 aa
AA seq
DB search
MASGDRGDHDDYSDVLPALRTMHEEKDDARRARLREDVIARCLPLADHVARRFSERGEPI
DDLRQVARIGLMHAVDRFDVERGNNFLAFAVPTVMGEVKRYFRDSTWSIRVPRRAQEASL
NIAKASEELLQSLGRSPRPSEIAQHLGLPVSEVIEGMVARSAYTASSIDAEAGSSTDGWT
LADTLGDEDARLELVEEFVTLQPALERLTERERTILTLRFFKSMSQSEIARQVGISQMHV
SRLLTRILETLRSEVVDDDDENSRPGSQADSERAATKSRGTPRGFTA
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggtgaccggggcgatcacgacgattacagtgatgtccttccggctctgcgg
accatgcacgaggagaaggacgacgctcgtcgtgcccggctgcgggaggacgtcatcgcg
aggtgcctgcccctggcagaccatgtcgccaggcgcttctcggagcgcggggaacccatt
gacgacctgcgtcaagtggcgcggatcggtctcatgcatgccgtcgaccgtttcgacgtc
gaacgaggcaataatttcctggccttcgcggtcccgaccgtcatgggcgaggtcaagcgc
tacttccgcgacagcacctggtccatccgcgtgccacgccgggcccaggaggcgtcgctc
aacatcgccaaggccagtgaggagttgctgcagtctctcggacggtcgccgcgcccgagt
gagatcgcccagcacctcgggctgcccgtcagcgaggtgatcgagggcatggtcgcccgg
tcggcttacacggcgagctcgatcgatgccgaagccggttcgtcgaccgacggctggacg
ctggccgacaccctcggcgacgaggacgcgcgactggaactcgtcgaagaattcgtcacg
ctgcagccggccctcgagcggctgaccgaacgcgagcgcaccatcctcacgttgcggttc
ttcaagtccatgtcgcagagcgagatcgcgcgtcaggtggggatctcccagatgcatgtg
tcgcgcctgctgacgcggattctcgagaccttgcgatcggaagtcgtcgatgacgatgac
gagaactccaggccgggatcgcaggccgacagcgagcgtgccgcgacgaagagccgcggc
acgccacgcgggttcacggcttga
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