Grimontia hollisae: AL542_00600
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Entry
AL542_00600 CDS
T04260
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gho
Grimontia hollisae
Pathway
gho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL542_00600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gho03019
]
AL542_00600
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL542_00600
Messenger RNA biogenesis [BR:
gho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL542_00600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_11
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AMG28982
LinkDB
All DBs
Position
2:complement(134113..135345)
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AA seq
410 aa
AA seq
DB search
MSGNAFSLLHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPV
IHQLLERGVKGAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLT
KKPEIIVGTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQT
LFFSATYPKQVVDLAYRLLSNPVRIEVSTANSTAETVNQLVHPVDKKRKRELLSYLIGSR
NLQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATD
VAARGLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREEEGMLTAIETL
IDLRLPQEWLAGYEPDLHADMEYRQKRGGRGGEKRRLKRQLLKKVGDGKR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaatgctttttcccttcttcatccgacactccagcacacactgaatgcgctg
ggttactccgatcctacggctatccagcaacaagccattcctcatgtgttggacggaaaa
gatgtgatgggcgccgcgcagacaggcacgggcaaaacagcggcgtttgccctgccggtt
atccaccagcttttggaacgtggcgtaaaaggcgcagccagggttttagttgtcacccct
acccgcgaactggcacaacaggtatatgaaaaagtcgtcgaatacagccagcacacgtca
ctcaaatgcgtcgccctttatggtggcgcaaacatcaacccgcagaaaaaccaactgacg
aagaagccagaaatcatcgtcggaacgccgggccgtctactggatcacctgcatatcggt
accttgacactcaacagcctggacactctgatcctggatgaagccgaccgcatgcttgac
atgggctttatttcagacatcaaacgcctgatgaaaaaaatgccgaaaacacgccaaacg
ctctttttctccgcaacgtatcccaaacaagtggtcgatctggcctaccgcctgttgagc
aatcctgttcgtattgaagtgtccacagccaacagcactgctgagacggtaaaccagctg
gtccaccctgttgacaaaaagcgcaaacgggaactgctttcttacctgattggcagccgc
aatctccagcaggtattggtatttgccaaaacccgacaaagcactgaagcattagccaat
gagctcaaactggatggcctgaaagcagaagcgattcacggagagaaaacccagggcgca
cggaaccgggtactggaagggtttaaatctggggaagtacgggtattggtcgcaacagac
gtcgctgcccgcgggttagacattccatcgctggatactgtgtttaactatgaattgcct
caccaaccggaagattacattcatcgtattggccgtaccggacgcgcaggaaagccaggc
atggcaatttcattggtcagtcgcgaagaagaaggcatgttgacagcaattgaaacactg
atcgacctgcgactgccgcaagaatggttggccgggtatgaaccggatttacatgctgac
atggaataccgccagaaacgcgggggacggggaggagaaaaacgccgtctcaaacgtcag
cttctcaaaaaagtgggggatggaaaacgctaa
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