Grimontia hollisae: AL542_01725
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Entry
AL542_01725 CDS
T04260
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gho
Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gho03016
]
AL542_01725
Enzymes [BR:
gho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL542_01725
Transfer RNA biogenesis [BR:
gho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AL542_01725
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AMG29189
UniProt:
A0A377J6G9
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All DBs
Position
2:complement(380922..382919)
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AA seq
665 aa
AA seq
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MFQDNPLLAQLKQQIKETIPKKEGSIKATEKGFGFLEVDSKTSYFIPPAYMKKVMHGDKV
VALIRTENDKEVAEPDELLEQSIDRFIGRVKMIRNKLNVVPDNPQLKDAIRAKTKKGLSH
DALAEGDWVVATLIQHPLKGDNNFFCEISEKITDANDKIAPWWVTLAKHNLPNQEPAPQS
GWEMLDESLTREDLTGLPFITIDSESTKDMDDALHTVANADGTFTLTIAIADPTAYVAQG
TDLDKEARARGFTIYLPGRNIPMLPRELSDDLCSLREEEIRPALCCRVTVLADGTIADDA
TFFAATIKSQGRLAYDNVSDLLETGRCDKWTPSEVIAEQINALHGLAKARIAWREANAVT
FPDRPDYRFELSEDNDVIAIHVDFRRIANRMVEEAMITANICAGRTLREHFGFGVFNTHS
GFAPEKIVDAVELLNSHGGEVTAEALATLDGFSALRRWLNEQETTYLDNRIRKYQSYSEI
GNTPAPHFAMGLDVYATWTSPIRKYGDMVNHRLLKAIIRGENSAQTPDETIGEELALHRK
HHRMAERDVADWLYVRLLKDSVEAKTTFTAEIFDINRAGMRVRLLENGAMAFIPAPMIVD
NKDRIECNGDLGTISVDGTTEFQLGDTIEVVLIDVKEPTRSIIGKPTREFAVIAEKAGEA
EEKSK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccattactcgcacaattaaaacagcaaatcaaagagaccattcca
aaaaaagaaggctcaatcaaagcaacagaaaaaggctttggcttcctcgaggtcgacagt
aaaacaagctacttcatcccccctgcatacatgaaaaaagtgatgcacggggacaaagtc
gtcgcgcttatccgcaccgaaaatgacaaagaagtcgctgaacctgacgagctgctggag
cagtcaatcgatcgttttattggccgtgtgaaaatgatccgcaacaagctgaatgtggtg
ccggataaccctcagctgaaagacgccattcgtgcaaaaactaaaaaaggattgagtcat
gatgcacttgccgaaggcgattgggtggtcgcaacactcattcagcatccactgaagggt
gacaataactttttctgtgaaatcagtgaaaaaatcacggatgccaacgacaagatcgcc
ccttggtgggtgacgttagccaagcacaatcttccaaaccaggaaccagcccctcaatcc
ggctgggaaatgttggatgaatcgctgactcgtgaagacctaacaggactgccattcatt
actatcgacagtgaatcgaccaaagatatggacgatgccttgcacacggttgctaatgcc
gatggcacatttacactgacaatagcaattgccgatccgacagcgtatgtcgcacaaggc
actgacctggataaagaagcgcgcgcgcgtggctttacgatttacctgccaggtcgcaat
attcccatgctcccacgtgagctgagtgacgatctttgctcgctgcgcgaagaagaaata
cgcccggccctgtgttgccgtgttactgtgcttgctgacggcacgattgcagatgatgca
acattctttgctgccacaatcaaatcacagggtcgtctggcttatgataatgtttccgat
cttctggaaaccggtcgctgtgacaaatggacaccttcagaggtgattgccgaacaaatc
aatgcacttcacggtttggcgaaagcacgtattgcttggcgtgaagccaatgcggtgacg
tttcctgaccgccccgactaccgtttcgagttgagtgaagacaacgacgttatcgccatt
cacgttgacttccgccgtatcgccaaccgtatggttgaagaagcgatgatcacagccaac
atctgcgccggccgaacattgcgcgaacactttggcttcggtgttttcaacactcactcg
gggtttgcgccagagaaaatcgtagatgcggttgaattgctcaacagtcatggcggtgaa
gtgactgccgaagccctagcaacacttgacggtttcagtgcattgagacgctggttgaat
gaacaggaaacaacgtatctagataaccgtatccgcaagtaccaatcctacagtgaaata
gggaacactcctgcacctcacttcgcaatgggtttggacgtttacgcaacctggacatca
ccaatccgtaaatacggggatatggttaaccaccgcttgctcaaagcgattatccgtggc
gaaaattcagcacagacacccgatgaaacgatcggtgaagaactcgccctgcaccgcaaa
caccatcgtatggcggaacgtgatgtcgcagattggctgtatgtccggctgctaaaagat
agcgtagaagcaaaaaccacgttcacggcagagatcttcgatattaaccgtgcgggcatg
cgtgtgcgactgttggaaaatggcgcaatggccttcattcccgcaccaatgattgttgat
aacaaggatcgtatcgaatgtaatggcgatctcggcaccatctctgtcgatggcacgaca
gaattccagttaggcgatactatcgaagtagtgctaatagacgtgaaggagcctacccgc
tctatcattggtaagcccacccgtgaatttgcggtcatcgctgaaaaagcaggagaagcg
gaagaaaaaagcaaataa
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