Grimontia hollisae: AL542_01735
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Entry
AL542_01735 CDS
T04260
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gho
Grimontia hollisae
Pathway
gho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL542_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gho03019
]
AL542_01735
03009 Ribosome biogenesis [BR:
gho03009
]
AL542_01735
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL542_01735
Messenger RNA biogenesis [BR:
gho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL542_01735
Ribosome biogenesis [BR:
gho03009
]
Prokaryotic type
rRNA helicases
AL542_01735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMG29191
UniProt:
A0A377J6M5
LinkDB
All DBs
Position
2:385105..386961
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AA seq
618 aa
AA seq
DB search
MQETVTEFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAF
SLPLLNKLDLGQRKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMR
ALRAGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI
ERVTSTRMEEIQLPLRDKVAEARLARLAADLHEQKESESLEAFVGLIEKLQEQIDVDTAT
LAAMLLQRQQGKRPLFYNGPDPLIAAMERESRRRDSRRDDRAPRERSERGERRSYNAADW
DTYQLQVGRDQGVQVKDIVGAIANELGLEKQFIGSIKLATGHTYVQLPKKMPKEILGQLR
QLRIRQKATDAQLVEGHVDMAPPRRRNGGDRNGGDRGPRRFDDRGPRGGNRSDKGRRFDR
DRSGDRRSFRGERRHAEA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaactgttacagaatttcgccagttagatctggctgaaaacatcctttccgct
cttgacgcaatcggttttgtttcaccaacgcccattcaagcggcctcgattcccctcctt
atgaccggtgttgatgcactgggtaaagcgcaaaccggtaccggtaaaacggcggcgttt
tcacttccactgctgaacaagctggacctgggccaacgtaagccacaagctatcgtgatg
gcgccaacccgtgaactggcgattcaggtggctgctgaaatgaaagcgctgggccagaaa
attgatggtctaaaggtgctggaaatctacggtggtgcgtctatcgttgaccaaatgcgt
gctctgcgcgccggtgcacacattgttgtggggacgccgggtcgtgtgaaagatctgatc
aatcgtgagcgtctgcaattggacgaagtgcataccttcgtattggacgaagctgacgaa
atgctcaagatgggcttcgttgatgatgtcacttggatcatggagcaggcgccggaatct
gcacagcgcgtgttgttttctgccaccatgccgccaatggtgaaggaaatcgttgatcgc
ttcctgcgtgaaccagcacgtattgatgttgctggcagcaaccgtactgttgagaaagta
gaacaacagttttgggttgttaaaggcgtagaaaaagatgaagcaatgtctcgtctgctt
gaaacagaagaaactgacgcatcgattgtattcgtacgcacccgccaggacactgaacgc
ttggctgactggttgagtgcgcgtggcttcaaagcggctgcgctgcatggtgatattcct
cagtctctgcgtgagcgtacggttgagcacatcaaacgtggtgttatcgatattctggtt
gcgactgacgttgtggcccgtggccttgatgtgccacgtattacccacgtctttaactac
gacattccgttcgatgttgagtcatatatccaccgtattggccgtactggtcgtgcggga
cgtgccggtaaagcgattctgctggttcgtactaaccaaatccgcatgctgcgtaccatt
gagcgcgtaacctctacccgaatggaagaaatccagcttccactgcgtgataaagtggct
gaggcacgtttggcgcgtctggcagcagatttgcacgagcagaaagaatcagaaagcctg
gaagcgtttgtcggtcttatcgaaaaattgcaagagcaaattgatgtagatactgcgaca
ttggcagccatgttgcttcaacgccagcaaggcaagcgcccactgttctacaatggccct
gatcctttgattgcggcgatggagcgtgaaagccgccgtcgtgattcacgtcgtgatgac
cgtgctccacgtgagcgttcagagcgtggtgagcgccgtagttacaatgctgctgactgg
gatacttaccaactgcaagttggtcgtgatcaaggcgtacaggttaaagatattgttggt
gcaattgcgaacgagttaggtctggagaagcaattcatcggctctatcaaactggcaaca
ggccacacttacgtccagttgccgaagaaaatgccaaaagagattctgggccaactgaga
cagctgcgtattcgccagaaagccactgatgcacagctggttgaagggcatgttgacatg
gcaccaccacgtcgccgtaacggcggtgaccgcaatggcggtgatcgtggtcctcgtcgc
tttgatgaccgtggcccacgtggtggtaaccgcagtgacaaaggtcgtcgttttgaccgt
gatcgcagcggcgatcgtcgctcattccgtggcgaacgccgtcatgcagaggcttaa
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