Grimontia hollisae: AL542_03700
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Entry
AL542_03700 CDS
T04260
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gho
Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gho03032
]
AL542_03700 (topA)
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_03700 (topA)
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL542_03700 (topA)
DNA replication proteins [BR:
gho03032
]
Prokaryotic type
DNA Topoisomerases
AL542_03700 (topA)
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL542_03700 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
VGCC_beta4Aa_N
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AMG29587
LinkDB
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Position
1:complement(43760..46381)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTGAAQGGKKAAPVSTKGLSAEE
KERIRKEKEKNALINKMGVDPYRDWKANYQILPGKEKVVQELKALAEKADYVYLATDLDR
EGEAIAWHLREIIGGEESRFKRVVFNEITKNAIQQAFEAPGELNMSGVNAQQARRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREHEIKAFVPQEYWDIHTDTTTASQHVL
RLVVAQQNHEAFKPLNEAQAMAATDALKKATYKVVDREDRPTSSKPSAPFITSTLQQAAS
TRMGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVEAARGFISSEYGEKYLPPSANV
YGSKSNAQEAHEAIRPSSVDVKADDLQGMDPDAHRLYDLIWRQFVACQMTPAKYDSSTIT
VEAGEFTLKAKGRTLRFDGWTRVQRPMGKNEDTTLPHVDVGEVLTLDKVDPKQHFTKPPA
RYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVRVEQRRFYAEKMGEIVTDRLDASFA
DLMDYDFTARMEEQLDQIAMGSEDWKAVLNNFFKDFTGDLERAELDEGEGGMKPNSIVLT
DIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLMDEEGIVNVLEEDVETEAL
RAKKRCPKCETAMDAYLIDQERKLHVCGNNPSCDGYVVEKGEFKLKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPIHFPELPCENSDAYFVLRDGA
SGLFLAASNFPKSRETRAPLVEELARFKDRLPEKLQYLAEAPTADPDGRKAVVRFSRKSK
ENYVRTEDDGKPTGWTGLFVNGQWEITDKRKKK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctcgttatcgtggagtccccggcaaaggcaaaaacgatcaataaatat
ctgggcaaagacttcatcgtgaaatcgagcgttggtcatgtccgcgatctgcctaccggt
gccgcacaaggcggcaagaaagcagcgcctgtttcaacgaaagggttgagtgcggaagaa
aaagaacgcatcagaaaagaaaaagagaaaaacgcgctaatcaataaaatgggtgtcgac
ccctaccgtgactggaaagcgaactatcaaatccttccaggcaaagaaaaagtcgtacag
gaactgaaagcgctggcagagaaagcggattacgtttatctcgcaacggatttagaccgc
gagggagaggcgattgcctggcacttgcgggaaatcatcggtggcgaagaaagccgtttt
aagcgtgttgtctttaacgaaattaccaagaacgccatccagcaagcttttgaagctccg
ggtgagctgaatatgtcgggtgtcaatgcccaacaggcacgtcgcttccttgaccgcgtt
gtcggctttatggtttcgccgctactttggaaaaaagtggcgcgtggtttatctgcaggc
cgtgttcagtcagtcgctgtaaaactgctggtggaacgtgagcatgaaatcaaagcgttt
gttccgcaggagtattgggatatccataccgatacgaccacggcgagccaacatgtgctg
cgcttggttgtagcccagcaaaaccatgaagcctttaagccgctcaatgaagcacaggcg
atggcggcaacggatgcgctgaaaaaggcaacgtataaagtggttgatcgtgaagatcgc
ccgaccagcagcaagccatctgccccctttattacctcgacgctgcaacaggcggcgagc
acccgtatgggctttggcgttaagaaaaccatgatgctggcacagcgcctctatgaagcg
ggttacatcacctatatgcgtaccgactccaccaacctgagtaaagaggctgtggaagcc
gcacgcggttttatcagcagtgaatacggcgagaaatacctgccaccgtctgccaacgtc
tacggttcaaaaagcaatgcacaggaagcgcacgaggcgatccgtccttcaagtgtggat
gtgaaagccgacgatctgcaaggtatggatccagacgcccatcgactctatgacctaatt
tggcgccagtttgtcgcgtgccagatgacaccggcgaaatacgattccagcaccattacc
gtggaagcaggggagtttaccctgaaagccaaaggccgtactttgcgctttgatggttgg
acacgcgttcaacgcccaatgggtaaaaatgaagacaccacattgccacatgttgatgtt
ggtgaagtgctgacgctggacaaggtcgacccgaaacaacacttcaccaaaccgccagcc
cgttataccgaagcagcactggttaaagaacttgagaagcgtggtatcggccgtccgtcg
acgtacgcatctattatctcaaccattcaggatcgcggttatgtacgcgttgagcagcgc
cgtttttacgcagagaagatgggtgagatcgttaccgaccgtctggatgcaagctttgcc
gatctgatggactacgactttacggcacgcatggaagagcagctcgaccagattgcgatg
ggctctgaagactggaaagcggtgctgaacaacttctttaaagacttcaccggcgacctt
gaaagggcggagctggatgaaggcgaaggcggcatgaaaccaaacagtattgtgctgact
gacatcgactgcccaacctgtggccgtaaaatggggatccgtacggcgtcgaccggtgta
ttcctgggatgttcagggtatgcgctgccgccgaaagaacgctgcaagaccaccatcaat
ctgatggatgaagaaggcatcgtcaatgtgttggaagaagacgttgaaaccgaagccttg
cgcgcgaagaaacgttgcccgaaatgtgaaaccgcgatggacgcctacctgattgatcag
gagcgtaaactgcatgtttgtggtaacaacccaagctgtgacggctacgtggttgagaaa
ggcgagttcaagctcaaagggtatgatggtccggtagtggagtgtgataagtgtggctct
gatatggtgctgaaaaatggccgttttggtaagtacatggattgcaccagcgaaacctgt
aaaaacacccgcaagatcctgaagaacggtgaagttgcaccaccaaaagaagatccgatc
cacttccctgaactgccttgtgaaaactcagacgcgtactttgtgcttcgtgacggtgca
tcaggcttgtttctggctgcgagtaacttcccgaaatcgcgtgagacccgtgcgccgctg
gtagaagaactggcccgttttaaagatcgcctgcccgagaaactccagtatttggcagag
gcgccgaccgcagatcctgatggtcgtaaagccgtagttcgttttagccgcaagagcaaa
gagaattatgtgcgtaccgaagatgacggtaaaccaaccggttggacggggttatttgtt
aacggccagtgggaaattacggataaacgcaagaagaagtaa
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