Grimontia hollisae: AL542_04345
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Entry
AL542_04345 CDS
T04260
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gho
Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gho03016
]
AL542_04345 (rnd)
Enzymes [BR:
gho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AL542_04345 (rnd)
Transfer RNA biogenesis [BR:
gho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AL542_04345 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
EnY2
Glyco_transf_88
Motif
Other DBs
NCBI-ProteinID:
AMG32097
LinkDB
All DBs
Position
1:complement(182352..183476)
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AA seq
374 aa
AA seq
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MNFEIITEPSQLERVCQQARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGETLSLIDPIEL
DDLSPLWGLLTDESVVKVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFLGHGLSTGFAS
LVEEYLVVTLDKGEARTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVK
QECALMASKRGKTPEPEKAYLDIKNAWQLRPKQLAVLQKLASWRLREAQRRDLALNFVVR
ELHLWKMARFNIRSLDKMAEEGFDRFEIERHGSRLIRMAQEADKTPASLYPEEIVRLVDM
PGYKQMVKNIKEQTNAVAEKLGVVPEFVGSKKQIHQVLKWAWMNDRNPEKMPDMLTGWRK
TYLADKVLAVLDGQ
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttcgaaattataactgaaccgtcccaacttgaacgtgtttgccaacaggcccgt
caggtaccggctgtgatgctggataccgaatttgtgcgtacccggactttgtatccacga
ctgggtcttatccaattgtatgatggtgaaacactgtctttgattgacccaattgaactt
gacgatctttcaccgctatgggggttgctgacggatgaatcggtagtgaaagtgctacat
gcctgtagtgaagacctggaagttttttaccattacgcaggtgcgatgccaacgccgatg
gtagatacccagattatggcggcttttttggggcatggcctgtcgacgggttttgcctcc
ctggtggaagaataccttgtcgttacgttggataaaggtgaagcgagaacggattggtgt
gcccgtcccctgagcgagaaacagctcgagtatgccgcggcagatgtctattacctgctc
ccactgtataacgagctctccaagcgggtatctgctgcaggctgggatgaagccgtgaag
caagagtgcgccctgatggccagcaagcgtggcaaaaccccggaaccggaaaaagcctac
cttgatattaaaaatgcgtggcagcttcgccccaagcaactggcggtgctccaaaagctg
gcaagctggcgcctaagggaagcccagcgccgggatttagcactgaattttgtggtcagg
gaactccacctttggaagatggcacggtttaacatccgttcactcgacaaaatggcggaa
gagggctttgatcgctttgaaattgagcgccatggtagccgtttgatccggatggcacag
gaagcggataaaacacccgcttccctttacccagaagaaatcgtgcgtttggtggatatg
ccaggctacaagcagatggtgaaaaacatcaaagagcaaaccaatgccgtcgcggaaaaa
ctgggtgtggtgcctgagtttgtcggttcgaaaaaacaaattcatcaggtattgaaatgg
gcatggatgaatgatcgtaacccagagaaaatgcctgatatgttgacaggatggcgaaaa
acttacttggcggacaaggtgttagctgtgttagatggacaataa
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