Grimontia hollisae: AL542_06030
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Entry
AL542_06030 CDS
T04260
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gho
Grimontia hollisae
Pathway
gho03030
DNA replication
gho03430
Mismatch repair
gho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL542_06030
03430 Mismatch repair
AL542_06030
03440 Homologous recombination
AL542_06030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gho03032
]
AL542_06030
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_06030
Enzymes [BR:
gho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AL542_06030
DNA replication proteins [BR:
gho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AL542_06030
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AL542_06030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AMG30002
LinkDB
All DBs
Position
1:complement(540365..543844)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSS
GVKPIIGADFKMQTDTFGDDLCQITVLAANNAGYKNLTLLISKAYLRGHIQHQPVIDIQW
LAELKDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYIELIRTGRADEEA
YLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNEYFLPNFPTEGMEIGEFLIKKSKEGL
EERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDKVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFAPLYCDSEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQAPVRIDAIKMDDQASFRLL
QNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEM
AKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYRFNVNEKGEIVYGIGAIKG
VGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKLIQSGAMDRLGPHRAAMMA
SLDDALKSASQHHQAEAFGQTDMFGVLTAAPEEVEHKYTKVPPWPDKVWLEGERETLGLY
LTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAARVMTTKRGTRIGILTLDD
RSGRMEVMLFSDALEKYLDLIEKDRILVVSGQVSFDDFNGGLKMSAREVLDISQAREKYL
RGLAISVTDRQIDNKFFERFSDILVPHRAGTVPVNLYYQRDNARAKLVLGAEWRVTPDDK
LIDDLKTLLGDKQVELEFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccacgctttattcatctccgtgttcacagtgacttttccatggtcgatggc
cttggcaaagtgccgccactggttaaaaaagtggcagagcttggtatgcccgccatggca
ttgactgacttcaccaacctgtgtggcctggtgaagttttataacacggcacaaagcagt
ggtgtgaagccgatcatcggcgctgactttaaaatgcagacagacacctttggtgatgac
ctttgccaaattaccgtgctggctgccaataatgccgggtataaaaacctgacgctactg
atttcaaaagcctatcttcgcggccatatccagcaccagccagtgattgacatccaatgg
ctggcagagcttaaggatggcctgattatcctttctggcggcaaaaacggtgatgtgggt
aaggcgttgctgaaaggcaatatggcgctggcggcgcagtgcgcagctttttatcagcag
catttccctgatgcctattacattgagcttatccgcaccggtcgtgccgacgaagaggcc
tacctgcactttgccgtggagtttgcagaagagcagggactgccagtggttgccaccaat
gaagtgtgcttcctgaccccggatttgtttgatgcccacgaaatccgtgttgccatccat
gatggctatacccttgaagatccgcgcaggccgaaaaattacagcccacaacaatacctt
cgcagcgaagaggaaatgtgtgagctgttccaggacattccggaagccctggcaaacaca
gtagaaatcgccaagcgctgtaatgtgacggtgcgcctgaatgaatacttcctgcctaac
ttcccgacagaaggcatggaaatcggtgagttcctgatcaaaaaatccaaagaggggctt
gaggagcgtctcgagtttctgttcccggatcctgaggtgcgtgccgaaaaacgtccggaa
tacgatgagcgtctggacattgaacttcaggttattaaccagatgggatttccgggttac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaacattccagtgggaccg
ggacgtggttccggcgcaggctcgctggtggcgtacgccctgaaaatcaccgatctggat
ccgctggaatttgacctgctgttcgaacgtttcctcaacccggaacgtgtttccatgcct
gacttcgatgtcgatttctgcatggataaacgtgataaggtgatcgatcacgtcgccgag
atgtatggccgtgatgcggtatcacaaatcatcactttcggtaccatggcagcgaaagcg
gttatccgcgatgtcggccgggtgctgggtcacccctacggtttcgttgaccgtatttcc
aagttagtaccacccgatccgggcatgacactggcgaaggcgtttgaggcagagccccag
ctggctgaactctatgaagctgacgaagaagtccgcgagctgattgacacctgccgtatt
cttgaggggtgtacccgtaacgccggtaagcatgcgggtggcgtggttatatcgcctacg
actattactgacttcgcgccactgtattgtgatagtgaaggcaatttcccggtaacccag
tttgacaagaacgatgtggaaaccgctggtctggttaaatttgactttctcggcctacgt
accctgaccattatcgactgggcgttatcgatgattaacccgcgcctggagaaaatgggt
caggcgccagtgcgtattgacgctattaaaatggatgatcaggcgtcattccggttgctt
caaaacgcggagacaacggcggtattccagcttgaatcgcggggtatgaaggaactgata
aagcgcctgaaacctgactgtttcgaagacatgatcgcactggtggcgctgttccgccca
gggccactgcaatcgggcatggtagataacttcatcgaccgtaagcacggtcgtgaagcc
gtctcatacccggacgaaaagtggcaacacgagtcactaaaagagatccttgatcccacc
tacggcatcatcctctatcaggaacaggtgatgcagattgcgcaggtgctcgcgggctac
tcactggggggcgctgatcttttgcgccgtgcaatgggtaagaaaaagcccgaagagatg
gccaagcaacgcgcgaccttcgaacagggcgcgatcaaaaatggcgttgacggcgaactg
gcgatgcgcatctttgacctggtagagaaatttgccgggtacggtttcaacaaatcgcac
tctgccgcctacgcactggtttcctaccagacgctttggctcaaaacccacttcccggca
gaattcatggcagcggtgatgaccgctgatatggataataccgacaagatagtggggttg
gtggaagagtgccgccggatgaaactcaccatactaccgccggatgtgaatgcaggtctt
taccgtttcaatgtgaacgagaaaggtgagattgtttacggtatcggggcgatcaaaggg
gtgggtgaagcgccgattgaaaacatcatcaaggcccgtgaagaaggcggatacttccgc
gacttgttcgacttctgtgcccgcatcgacaccaaaaaagtgaacaagcgcgtgattgag
aaacttatccagtcaggcgcgatggacaggctgggaccacaccgagctgccatgatggca
tcactggatgacgcactgaaatcagccagccaacatcatcaggcggaagcgtttgggcaa
accgatatgtttggtgtgttgactgctgctccggaagaggttgagcacaaatacaccaaa
gtgccgccgtggccggataaagtctggctggaaggggaacgagagaccctaggactatac
ctgacaggtcatccaataaacagctatgtgaaagagctgaaacattacatcacctggcgc
cttgaagatgcccatgccactaaacgtgatgtggtatcaacggtcgcggggctggtgatt
gctgcccgtgtcatgaccaccaaacgggggacacgtatcggtatcctgactttggatgat
cgctcgggccgtatggaagtgatgttgttctcagatgcgctggaaaagtatctggatctc
atcgaaaaagaccgaattttggtggtatccggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcacgagaagtgcttgatatatcccaagcgcgtgaaaagtacctg
cgtggtcttgctatctctgtgactgacaggcaaattgataacaaattttttgaacggttc
agtgatattctggtgccacaccgtgccggtacagtaccggtgaacctttactatcagcgt
gacaatgcgcgtgccaaattggtcttaggtgcggagtggcgtgttacaccggatgacaag
ctgatcgacgatttaaaaacgctgctcggcgacaaacaggtcgagctggaatttgactga
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