Grimontia hollisae: AL542_06275
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Entry
AL542_06275 CDS
T04260
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gho
Grimontia hollisae
Pathway
gho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AL542_06275 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_06275 (recD)
Enzymes [BR:
gho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AL542_06275 (recD)
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL542_06275 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
Viral_helicase1
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
DEAD
AAA_16
nSTAND3
PhoH
AAA_28
TrwB_AAD_bind
CbiA
NTPase_1
SRP54
RNA_helicase
T2SSE
PIF1
Motif
Other DBs
NCBI-ProteinID:
AMG30047
LinkDB
All DBs
Position
1:complement(591954..593951)
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AA seq
665 aa
AA seq
DB search
MAISEKLEALYKRNAIRAIDRQFSQFIGEQLGDENSPVVGWAALVSFELGKGNVCVDLSA
LEGARLFDLMPAESASLAALMVPENALSMLSASPVVGDGSQPTPLVLSGSRLYLYRYWAA
ECLVVSEIAKRSGELPLPMNLRSVLDGLFTPDVAFLRARYPQWTDEEKAAKLADFFDITD
SSQIDYHALQAALEAGVSDNDVLSHVPDGARLNWQKVAAAVALSSRFAVISGGPGTGKTT
TVAKLLAAIVSSSDNPNGPEIKLVAPTGKAANRLTESIGKAVEALPVTDSVRRKIPAQAS
TIHRLLGAIPNRVEFRHHQGNRLHLDVLVVDEASMVDLPLMARLLSALPEHARVILLGDR
DQLASVEAGAVLGDICLGAGQGFSPPRAKLLSALTGFVLPEAAGLPAVADSVCLLRKSYR
FHAQSGVGQLAYAINAGDTRTLDRVIQSGFRDIALHELDTDIYSEAIHLAVQGYRPYLTA
MVDGLPPRDVLRRFSECRLLCALSDGPFGVKGLNSVIEKALAKAGLVSPGEESFYPGRPV
MVTQNDHGLGLYNGDIGIVVKQEEGLRVVFEMADGTVRAFLPSRLPEHQTAYAMTIHKSQ
GSEFSHTILVLPPTPTPVMTRELVYTGVTRAKDRLDVYATRASLERAVKRKNQRFSGLAD
ALRAR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgataagtgaaaaactcgaggccctgtataaacgcaacgccatccgggccattgat
cgccagttttcccagtttatcggcgagcagctgggggatgaaaactccccggttgttggc
tgggcagcgttggtgagctttgagctggggaaaggaaatgtctgtgtcgatctctctgcc
ttggaaggagcgagactgtttgatctgatgccggctgaatctgcgtcgctggccgcgttg
atggtaccggaaaatgccctttcgatgctctctgcttccccggttgtcggcgatggctcg
cagcctactcctctggtgctgagtggcagccggctctatctttatcgctactgggcggct
gagtgtctggtcgtcagtgagattgccaagcggagcggggagttgccgcttccaatgaac
ttacgttcggtactggatgggctgttcacaccagatgtggcttttctgcgggcacgctat
ccgcaatggactgacgaagaaaaagcggcgaagctggcagatttctttgatatcacagac
agcagccaaattgattatcacgcacttcaggcggcgttggaggccggtgtcagtgataac
gacgtgctcagccacgtgcctgacggtgcaaggcttaactggcagaaagtcgcggcagca
gtcgcactgagttcgcgctttgcagtgatatccggcggcccgggtacgggaaaaaccacc
acggtggcgaagttgcttgcggccattgtcagcagcagtgataaccctaatgggcctgaa
atcaagctggtggcacccaccgggaaagcggctaaccgcctgacagaatccatcggtaaa
gcagtagaggcattgcctgttacagacagtgtgcggcggaaaattccggcgcaggcatcg
acgattcaccgtctgctgggcgccattcctaaccgcgtcgagtttcggcatcatcaggga
aaccggctgcacctggatgtactggtggttgacgaagcgtcaatggtggacttgcccctg
atggcaaggctgttgtctgcgctgccagagcatgcccgggtcattttgcttggtgaccgt
gaccagctggcgtcggtagaagccggggctgtgctgggcgatatctgtttgggggcaggg
cagggctttagcccgccgcgggctaagttgctgtcagcactgactggttttgtgctcccg
gaagcggcagggctcccggcagttgcagacagtgtctgtttgctcaggaaaagttaccgt
tttcatgcccagtctggggtagggcaactggcatacgccattaatgccggagacacccga
accctggatcgtgttattcaatccggttttcgtgatattgcccttcacgagctcgatact
gatatctacagcgaggcaatccatctggctgttcagggctaccggccctaccttacggcg
atggtggatggcttaccgccccgcgatgtgttgcggcgcttttctgaatgccgcctgctt
tgtgccctcagcgatgggccatttggtgttaaagggttgaacagcgtgattgaaaaggcg
ctggccaaagcagggctggtttcacccggcgaagagagtttctatccgggacgcccggta
atggtgactcaaaacgatcatggccttggcttgtataacggtgatatcggcattgtcgtg
aaacaggaagaggggcttcgtgtggtgtttgaaatggctgatggcacggtacgggctttc
ttgcccagccgccttccggagcaccagaccgcgtatgccatgactatccataaatcacag
ggctctgaattcagtcataccattctggtgttgccgccaacgccgacaccagtaatgacg
cgggaactggtgtataccggggttacgcgtgccaaagacagactggatgtgtatgcaacc
cgcgccagtctggagcgggctgtgaaaaggaaaaaccagcgtttcagcgggctggcagac
gcattacgcgcccgttaa
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