Grimontia hollisae: AL542_09335
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Entry
AL542_09335 CDS
T04260
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gho
Grimontia hollisae
Pathway
gho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL542_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gho03019
]
AL542_09335
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL542_09335
Messenger RNA biogenesis [BR:
gho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL542_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMG32157
LinkDB
All DBs
Position
1:1210008..1211306
Genome browser
AA seq
432 aa
AA seq
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MKMTHLTEQKFADFGLHADVLKGLEEKGFHNCTPIQALALPVLLTGQDIAGQAQTGTGKT
MAFLTATFHHLLTTEAPADRKKNCPRAIIMAPTRELAIQIYNDAAPLLASTSLTAGLAYG
GEAYEKQKDTLENGVDILIGTCGRIIDFYKQRVIDLRCIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPSERLNMLFSATLSYRVQELAFEHMTNPEHVVVEPEQKTGHRIKEELFYPSN
KDKMRLLQTLIEEEWPERAIVFANTKHRCEDIWGHLAADGLRAGLLTGDVPQKKRVKILE
EFTKGSLDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGASISFA
CEEYAVNLPAIEEYIDHTIPVSEYNEDALLTDLPAPIKVQRPRQVNSRRSTSGKGGAPSR
GRGRRRPSTSKA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgacacatctcacagagcagaaatttgccgacttcggtcttcacgccgatgtt
ctcaagggtttggaagaaaaagggtttcataattgtacccctatccaagcactggcattg
ccggtcctgctcaccggccaagacattgcagggcaagcccagacgggcacaggtaagacg
atggcattcctgactgcaactttccaccatttgctgacaacggaggcacccgccgaccgc
aagaaaaactgtccgcgcgcgatcatcatggcaccgacgcgcgagcttgcgatccagatc
tataacgatgcagccccactgctggcatcgacctcgctgaccgcaggccttgcctacggc
ggcgaagcatacgagaagcaaaaagacacactggaaaacggcgtcgatatcctgatcggc
acctgtggccgtatcatcgatttctacaaacagcgcgtgattgatctgcgttgtattcag
gccgttgtgctggatgaagcagaccgtatgttcgatctgggctttatcaaagacatccgc
ttcctgttccgccgtatgccggagccgtctgagcgcctgaacatgctgttctcggccacc
ctgtcataccgtgtgcaggagctggcatttgaacacatgaccaacccggaacatgtggtg
gttgaaccagaacaaaaaaccggtcaccgcatcaaggaagagctgttctacccttccaac
aaagacaaaatgcgcctgctgcaaaccctgattgaggaagagtggccggagcgtgcaatt
gtgtttgccaacaccaaacaccgttgtgaggacatttgggggcacctggcggccgacggc
cttcgcgcaggcctgctgaccggcgacgtaccgcagaaaaagcgtgtcaaaattctggaa
gagtttaccaagggtagtctggacattctggtagcaaccgatgtggctgcgcgtggcctg
catattccgcaagtcactcatgtgttcaactacgacttgccggatgactgcgaagattac
gttcaccgtattggccgtactggccgcgccggtgccagcggtgcatcaatcagcttcgcc
tgtgaagaatacgctgtgaacctgccggcgatcgaagagtacatcgatcacaccattccg
gtgtctgaatacaacgaagatgccctgttgaccgacctgcccgcgccaatcaaggtgcag
cgtccgcgtcaggtgaacagccgccgcagtacgtctggcaaagggggcgcaccttcacgt
ggtcgcggtcgccgccgcccgtcgaccagcaaagcgtaa
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