Grimontia hollisae: AL542_10140
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Entry
AL542_10140 CDS
T04260
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gho
Grimontia hollisae
Pathway
gho03420
Nucleotide excision repair
gho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL542_10140
03430 Mismatch repair
AL542_10140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_10140
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL542_10140
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL542_10140
MMR (mismatch excision repair)
Other MMR factors
AL542_10140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AMG30690
LinkDB
All DBs
Position
1:1372410..1374587
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AA seq
725 aa
AA seq
DB search
MDVSHLIDGLNDKQREAVAAPLGNYLVLAGAGSGKTRVLVHRIAWLMQVEYASPFSVMAV
TFTNKAAAEMRGRIEQLMQGTASGLWCGTFHGLCHRILRAHHLDANLPQDFQILDSDDQQ
RLLRRLIKAQNLDEKHWPARQASWYINAKKDEGLRPHHIDAQFDPVEKTWLRVYAAYQEA
CDRAGLVDFAELLLRCHELLRDKAHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGNS
ANVMIVGDDDQSIYGWRGAKIENITRFLQDFPGAETIRLEQNYRSTGNILKASNHLIENN
AERMGKSLWTEGQEGELISVYSAFNELDEARFVVGKIKAWQDEGGALNDTAILYRNNAQS
RVLEEALIQAGLPYRIYGGMRFFERQEIKDALAYLRLIGNRFDDAAFERVVNTPARGLGD
RTLDTIRLAARDRGATMWEASNQLLEEQALAGRAANSLRRFIELVNALEDDTREMALFQQ
TDYVILHSGLRAMYEAEKGEKAQARIDNLEELVTATRQFEVPEDVQEEMSPLSAFLSHAA
LEAGEGQADEFEDAAQLMTLHSAKGLEFPVVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITHAEMRRVYGKDMFHKASRFIRELPEECLEEVRMRAKVSRPAEATGR
FSQTQTKENFNQTGFTLGQRVLHPKFGEGTIINFEGSGQQSRVQVAFNGEGIKWLVTQYA
KLEAM
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcccacctgattgacggtctgaatgacaaacaacgcgaggctgtggctgcg
ccgcttggcaactacctggtcctggccggtgcgggcagtggcaaaacccgggtactggtt
catcgtattgcctggttgatgcaggtggagtatgcctcgccgttttcggtgatggcggtg
acctttaccaacaaggcggcggcagaaatgcgtggccgtattgagcagttaatgcagggt
acggcctccggtctctggtgtggcaccttccacggcctgtgtcaccgcatcctgcgtgcg
catcatctggacgcaaacctgccacaggatttccagatcctggattctgatgatcagcag
cgcctgttgcgccgcctgatcaaggcgcagaatctggacgaaaaacattggcctgcgcgc
caggcatcctggtacatcaatgccaagaaagatgaaggtctgcgtccgcatcatattgat
gcccagtttgatccggtcgaaaaaacctggctccgtgtgtatgccgcctatcaggaagcg
tgtgaccgcgcagggttggtggacttcgccgagctgttgctgcgctgccatgagctgctg
cgcgacaaagcgcacatccgcgagcattatcaggcgcgcttcaagcacattctggtcgac
gagtttcaggataccaacaacatccagtacgcctggctgcgtatgatggcaggaaacagc
gccaatgtaatgattgtcggggacgatgatcagtccatctacggctggcgtggtgcgaaa
attgaaaatatcacccgtttcctgcaggacttcccgggtgcagaaacgattcgtctggag
cagaactaccgttcgaccggcaatatcctcaaagcctccaaccacctgattgaaaacaac
gccgagcgcatgggcaagagcctgtggaccgagggtcaggaaggtgaattaatctcggta
tacagtgcatttaacgaactggatgaagcccgttttgtggtcggtaaaatcaaggcctgg
caggacgaaggcggtgcactgaacgacacggccattttgtaccgcaataacgcccagtcc
cgtgtactggaagaagccttgattcaggcgggcttgccctaccgtatttatggcggtatg
cgattcttcgaacgtcaggagatcaaggatgcgctggcctatctgcgcctgatcggtaac
cgttttgatgatgcggcctttgagcgtgtggtcaacaccccggcgcgtggcctgggtgat
cgtacccttgataccatccgccttgctgcacgtgatcgcggtgcaacgatgtgggaagca
agcaaccagttgctggaagaacaggcactggcaggccgcgcggcaaattccctgcgccgt
tttatcgagctggtgaatgcattggaagatgatacccgcgaaatggcactgttccagcag
accgactacgtgatcctgcattctggcctccgcgccatgtacgaagcggaaaaaggcgaa
aaagctcaggcgcgtattgataaccttgaagaactggtgaccgcgacccgccagtttgaa
gtacctgaagacgtgcaggaagagatgagcccgctgtccgctttcctttctcacgcggcg
ctcgaggcgggtgaaggacaggctgacgagtttgaggacgcggcgcagctgatgacactg
cacagtgccaagggcctcgaattcccggtggtctttatggtgggcgtggaagagggcatg
ttcccgagccagatgtcggcagaagaagccgggcgtctggaagaagaacgccgcctttgt
tatgtcggcatgacccgggcgatgcaaaaactctatattacccatgcagaaatgcgccgg
gtatacggcaaagacatgtttcacaaagcgtcacgctttatccgtgagctgccggaagag
tgccttgaagaggtgcggatgcgcgcaaaagtgtcgcgtccggcggaagccaccgggcga
ttctcgcaaacccagaccaaggaaaacttcaaccagaccggtttcacgcttggccagcgg
gtactgcaccccaaattcggcgaaggcaccatcattaactttgaaggcagtggtcagcaa
agccgtgtgcaggtggcctttaacggtgaaggtataaagtggctggtgactcagtacgcc
aagcttgaggcgatgtaa
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