Grimontia hollisae: AL542_10190
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Entry
AL542_10190 CDS
T04260
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gho
Grimontia hollisae
Pathway
gho03030
DNA replication
gho03410
Base excision repair
gho03420
Nucleotide excision repair
gho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL542_10190
03410 Base excision repair
AL542_10190
03420 Nucleotide excision repair
AL542_10190
03440 Homologous recombination
AL542_10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gho03032
]
AL542_10190
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_10190
Enzymes [BR:
gho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AL542_10190
DNA replication proteins [BR:
gho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL542_10190
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AL542_10190
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL542_10190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
AMG32162
LinkDB
All DBs
Position
1:1383188..1385983
Genome browser
AA seq
931 aa
AA seq
DB search
MATTPDNPLILVDGSSYLYRAYHASPNLTNAKGEPTGAVYGVVNMLRSLVKQYPQSHVAV
IFDAKGKTFRDDMYAEYKAHRPPMPDDLRSQIAPLHEIIEAMGFPMLVIEGVEADDVIGT
LAVQGSKAGMPILISTGDKDMAQLVDDNITLINTMTNVIMTPQGVHDKYGFGPEHIIDYL
ALMGDKVDNIPGVPGVGEKTATALIAGIGGLDDIYANLDKIADLGFRGSKTMAKKLEENK
ENAYLSYQLATIKLDCELPFKPEELTNREPDNEKLVALFTELNFKRWLAEAQNGGAGVTA
LSEKAASGTTATKSAENAEVVFKAAIIDRSQYDTILTEEAFQRWMEKLKNADVVAFDTET
DSLDYMEANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRDWVLAEMKLWLEDAGALKVG
QNLKYDASVLARYDIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAG
KGKKQLTFNQIELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLS
RMERHGVLISAEMLAKQSQEIAVRLDTLEKEVFELAGEEFNLSSPKQLQAILFEKMGLPV
VKKTPSGTPSTNEEVLQELALDYPLPKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTS
YHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLS
GDEALIDAFRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLG
IPRGEAQQYMDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKG
AERAAINAPMQGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVE
QQVCKLMESAALLDVPLVADSGSGANWDQAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgactcctgataacccgttgatcctggtcgacggctcttcgtatctttaccgc
gcgtaccacgcttctcccaacttgaccaatgccaagggcgaacctaccggggcggtttac
ggcgtggtcaacatgctgcgcagcttggtgaagcaatacccgcaatcgcacgtggcggtc
atttttgatgccaaaggtaaaacattccgcgatgacatgtatgcggaatacaaagcgcac
cgcccacccatgccggatgacttgcgcagccagattgcaccgctgcacgagatcattgaa
gccatgggtttccccatgctggtgatcgaaggggttgaggccgacgatgtgattggtacc
cttgctgtgcaggggtcgaaagccggtatgcctatccttatcagcactggtgacaaggac
atggcgcagctggtagatgacaacatcaccctgatcaacaccatgaccaatgtcatcatg
accccacagggtgtgcacgacaaatacggttttgggcctgagcacatcatcgattatctg
gcgctgatgggcgacaaagtggataacatcccgggcgtaccgggtgtaggagagaaaacg
gccactgccctgattgctggcatcggtggccttgatgacatctacgccaatctcgacaag
attgctgatcttggtttccgtggttcaaaaaccatggccaagaagctcgaagagaataaa
gaaaacgcctatctctcttaccagctggccaccatcaagctggattgcgagctgccattc
aaaccggaagagctgaccaaccgtgaaccggacaatgaaaaattggtggcgctgttcacc
gagctgaatttcaaacgctggctggccgaagcgcaaaatggcggtgccggtgtgacagcc
ctgtcagaaaaagcggcttctggtacaacagcaacaaaatccgccgaaaatgcggaggtg
gtgtttaaggcggcgataatcgaccgcagccagtacgacactattctgactgaagaggcg
ttccagcgctggatggaaaagctgaaaaacgcggatgtggtagcgtttgatactgaaact
gacagcctggattatatggaagccaacctggtcggtatctcttttgcggttgcagaaggt
gaggcggcttacctgcctctggcccacgactacctggatgcaccaaaacaactcgaccgt
gattgggtactggcagaaatgaaactgtggctggaagatgccggtgcgctgaaagtcggt
cagaatctgaaatatgatgcaagtgtattggcccgttatgacatcgcgatgcgcggtatt
gcttatgacaccatgctggaatcctatgtgttcaacagtgtagccgggaagcatgatatg
gacagcctggcgcttcgctacctgcaacaccagtgcatcagctttgaagagattgccggc
aagggcaaaaagcagctgactttcaaccagattgagctggatcaggctgccccttacgcg
gcagaagatgcggatgtgacgctgcgtttgcacaatgccttgatggcacaactcaacaat
gacgagaaactgaaagtcattttcgagcaatatgaaatgccgctggtgccagtgctttca
cgcatggaacgtcatggtgtgttgatcagcgctgaaatgctggctaagcaatcccaggaa
atcgcggtgcgtttggatacgcttgaaaaagaagtgtttgagttggccggggaggagttc
aacctaagctcaccgaaacagcttcaggcgattttgtttgaaaagatgggcctacctgtt
gtcaaaaagacgccatccgggacaccatccaccaatgaagaagtgcttcaggaattggca
cttgattatccactgccaaaacgcattttggaataccgtggcctggcgaagctgaaatcc
acgtacaccgataaactaccaaagatggtcaaaccggctaccggccgtgtacacacctcc
tatcatcaggcggtgacagcaaccggtcgtctatcatcaacggatcccaacttgcagaat
atccccatccgtaatgaggaagggcgccgcatccgtcaggcctttattgcgcctgcgggg
aaaaccattctggctgtcgactattcgcaaattgaactgcgtatcatggcgcacctgtcc
ggcgatgaagccctgattgacgctttccgccacggcaaggatatccacgcggcgacagcg
gcagaagtaatgggcattgatatcagtgatgtcaccccggaaatgcgccgccgagccaaa
gccatcaactttggcctgatttacggcatgagtgcgtttggcttggcaaaacaactgggc
attccgcgtggtgaagcgcaacaatatatggatcgctacttcgagcgctacccgggtgta
cgccagtatatggagaacacccgtctccaggctgctgaacagggatacgttgaaactatc
tttggccgtcgcctgcacctgccggaaatcaaatccagtaacgcgatgcgccgtaaaggt
gccgagcgtgcggccattaatgcgccgatgcaagggacggctgcagatatcatcaagcgc
gccatgattttggtggatgcgtggatacagcaacagccagaaggccgtgttgcgttgatc
atgcaggtacatgatgaactggtgttggaagtggataccgaacatttggcagaggtagag
caacaggtgtgtaagctgatggagtcagcggcattacttgacgtgccattggttgcagac
tccggaagtggggcaaactgggaccaggcccattaa
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