Grimontia hollisae: AL542_10550
Help
Entry
AL542_10550 CDS
T04260
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gho
Grimontia hollisae
Pathway
gho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL542_10550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gho03021
]
AL542_10550 (rpoC)
03400 DNA repair and recombination proteins [BR:
gho03400
]
AL542_10550 (rpoC)
Enzymes [BR:
gho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL542_10550 (rpoC)
Transcription machinery [BR:
gho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL542_10550 (rpoC)
DNA repair and recombination proteins [BR:
gho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL542_10550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AMG30754
UniProt:
A0A377HJ82
LinkDB
All DBs
Position
1:1453209..1457423
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYVVIEPGMTDLERGQMLSEEQYLDALEQWGDEFDARM
GAEAVKALLANMDLAAEAELMREELEETNSETKRKKITKRLKLVEAFLQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINAKGEGLYLSGPAEAEKAYRTG
NAELHARVKVRIKEVLFDELGNRSEKVELVDTTVGRAMLWQIVPEGLPYSIVNQALGKKQ
ISALLNTCYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVIPQAKYDLIEAAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANEQVAKAMMDNLSYDTVINRDGEEEEQKSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTETDCGTSEGINMMAVIEGGDVKEALRERVL
GRVVAEDVLKPGTDEVLAPRNTLLDEKWCDILEQNSVDQVKVRSVVTCETDFGCCAHCYG
RDLARGHLVNHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNNGSMHL
HNAKFVTNNAGKLVITSRASELTIVDEFGRTKESYKLPYGCVLSKLDGDAVTAGETVANW
DPHTMPIITEVEGRIQFVDMIDGITVQRQTDELTGLSSMVVLDAAERTSAGKDMRPAVKL
IDAAGNDVMIPGTEMPALYFLPGKAIVQLDDNAMVGIGDTLARIPQESGGTKDITGGLPR
VADLFEARKPKEPAILAEISGAVSFGKETKGKRRLIITPAEGQPYEEMIPKWRQLNVFEG
EKVEKGDVIADGPESPHDILRLRGVRAVTEYITNEVQDVYRLQGVKINDKHIETIVRQML
RKVTILSAGDSEFLEGEQVEYSRVTIANRMLEAEGKQPATFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHKARQARRNVVEEPVA
PQIDAEQASQDLAALLNAGLSDDN
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcacagcacaagaccgaagaatttgatgcaatc
aaaatcggtcttgcttcaccagacatgatccgttcatggtcatttggtgaagtgaaaaag
ccagaaaccatcaactaccgtacctttaagcctgagcgtgacggtctgttctgtgcacgt
atctttggcccggtaaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcac
cgtggcgtgatctgtgaaaaatgtggtgtagaagttactcagactaaagtgcgccgtgag
cgtatgggtcacattgagctggcttcacccgtagcccacatctggttcctgaaatcactg
ccaagccgtatcggcctgctgatggacatgcctctgcgtgacatcgagcgtgttctgtac
ttcgaatcatacgttgtgatcgaacccggcatgaccgatcttgaacgtggtcagatgctg
tctgaagaacagtatcttgacgcgcttgagcaatggggtgatgaattcgatgcccgcatg
ggtgccgaagcagtgaaagcgttgctggcaaatatggatctggccgctgaagctgaactg
atgcgcgaagagctggaagaaaccaactctgaaaccaagcgcaagaaaatcaccaagcgc
ctgaagcttgttgaagcattcctgcagtctggaaacaatcctgagtggatgatcctgact
gtacttccagttctgccgccggatctgcgtccgctggtaccactggatggcggtcgtttc
gcgacctctgatctgaacgatctgtaccgtcgtgttatcaaccgtaacaaccgcttgaaa
cgcctgctggatctggctgcacctgacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtcagttgacgccctgctggacaacggtcgccgtggccgtgccattactggttcgaac
aagcgccctctgaagtctctggcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgcttggtaagcgtgtagactactctggccgttcggtaatcaccgtgggtccatac
ctgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctgttcaaacccttt
atctacggcaagctggaagcacgtggtctggcgaccaccatcaaagcagccaagaaaatg
gttgagcgcgaagaagcggtggtttgggatatcctggatgaagttatccgcgaacaccca
gtactgctgaaccgtgcgccgacactgcaccgtctgggtatccaggcgtttgaaccagta
ctgattgaaggtaaagcaatccaactgcacccactcgtttgtgcggcatataacgccgac
ttcgacggtgaccagatggctgttcacgtacctctgacactggaagcacagcttgaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtctcctgcgtccggtgatccaatcatc
gtaccttctcaggacgttgtactgggtctgtactacatgacccgcgacaagattaacgca
aaaggtgaaggcctgtacctgtctggtcctgcggaagcggaaaaagcctaccgcaccggc
aatgctgaactgcatgcacgcgttaaagtccgtatcaaagaagtgctgttcgatgagctg
ggtaaccgctctgagaaagttgagctggtggacaccacggttggtcgtgcgatgttgtgg
caaatcgtgcctgaaggcctgccatacagcattgttaaccaggcgctgggcaagaagcag
atctctgcactgctgaacacctgttaccgtaaactgggtctgaaagacaccgttattttc
gctgaccaaatcatgtacaccggtttcgcctacgcggcactgtctggtgtttctgttggt
atcgacgacatggtgatcccacaggcgaaatacgatctgatcgaagcggcagaagcagaa
gttgctgagattcaggagcagttccagtctggtctggtaacggctggtgaacgctataac
aaagttatcgatatctgggcggcagcaaacgaacaagttgctaaagcgatgatggataac
ctgtcttacgacaccgtgattaaccgtgacggtgaagaggaagagcagaagtcgttcaac
agcgtttacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaaaccagatggttcgatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggatactgcactgaagacagcaaactccggttacctgacccgtcgtctg
gtagacgtagcgcaagacgtagtagtaaccgaaactgattgtggtacctcagaaggtatc
aacatgatggcggttatcgaaggtggtgacgttaaagaagcactgcgtgagcgtgttctg
ggccgtgtggtggcagaagacgtgcttaagccgggtaccgatgaagtgctggcgccacgt
aacaccctgcttgacgagaagtggtgtgacatcctggagcaaaactctgttgaccaggtg
aaagtgcgctctgttgtaacctgtgaaaccgactttggttgttgtgcacactgttatggt
cgtgacctggcacgtggtcacctggttaaccacggtgaatctgttggtgttatcgcggca
cagtcaatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaaagcagcatccaggtgaagaacaacggttctatgcacctg
cataatgcgaagtttgttaccaacaacgctggtaagctggtgatcacatcgcgtgcttct
gagctgactatcgttgatgagtttggccgtactaaggaaagctacaagctgccttatggt
tgtgtgctgagcaagctggatggcgatgccgttactgcgggcgaaaccgtggctaactgg
gatccgcacaccatgccaatcatcacggaagtggaaggtcgtatccagttcgttgatatg
attgacggtatcactgttcaacgtcaaaccgatgaactgaccggtctgtcttccatggtg
gttctggacgcagctgagcgtacttctgcgggtaaagacatgcgtcctgccgtgaagctg
attgatgcagcgggcaacgacgtgatgatccctggtactgaaatgccagcactgtacttc
ctgccgggtaaagcaatcgtccagttggatgataatgccatggtaggtatcggtgacaca
ctggcacgtattcctcaggaatctggtggtaccaaagatatcacaggtggtctgccacgc
gttgcagacctgttcgaagcacgtaagccgaaagagccagcaattctggcagagatctca
ggtgccgtttccttcggtaaagaaaccaaaggcaaacgccgcctgatcatcacgccagct
gaaggtcagccttacgaagagatgattcctaagtggcgtcagctcaacgtatttgaaggt
gagaaggttgagaaaggtgacgtcattgctgacggtccagagtctccacacgacattctg
cgtcttcgtggcgtgcgtgcggtaactgagtacatcaccaacgaagtacaagacgtttac
cgtttgcagggcgttaagattaacgacaagcacatcgaaactatcgttcgtcagatgctg
cgcaaagtgactatcctgtctgccggtgactctgagtttctggaaggcgagcaggttgag
tactctcgcgtgaccattgcgaaccgtatgctggaagctgaaggcaaacagcctgcaacc
ttcgagcgcgatctgctgggtatcaccaaagcgtctctggctaccgaatcgttcatctct
gcggcatcgttccaggaaacgacccgcgttctgaccgaagcggcagtatcaggcaagcgc
gacgaactgcgcggcctgaaagagaacgttatcgttggtcgcctgatccctgcgggtacc
ggttttgcttaccacaaagcccgccaagcgcgtcgcaatgtggtagaagagccagttgca
ccgcaaatcgatgctgaacaggcatctcaggatctggctgcgctgctcaatgcaggcctg
agtgacgataactaa
DBGET
integrated database retrieval system
