Grimontia hollisae: AL542_11690
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Entry
AL542_11690 CDS
T04260
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
gho
Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gho03021
]
AL542_11690
Transcription machinery [BR:
gho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AL542_11690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Helicase_RecD
AAA_34
DUF5614
Motif
Other DBs
NCBI-ProteinID:
AMG30955
UniProt:
A0A377HIS2
LinkDB
All DBs
Position
1:complement(1681624..1684542)
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AA seq
972 aa
AA seq
DB search
MSYALGQRWISDTESDLGLGTVVAIDARTVTLMFPASEENRLYACNDAPITRVMFNVGDT
VESHEGWFLTVERVDEDKGVLTYVGTRTDTGEGNVSLREIFLSHQIRFNRPQDKLFAGQI
DRMDRFALRYRALKNQYEQHKSPLRGLCGMRAGLIPHQLFIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRASRILVVVPETLQHQWLVEMLRRFNLHFSIFDEERCIEAFA
DADNPFDTAQLVLCSLDFLRKSRKRAEQAAEGDWDLLVVDEAHHLEWSEEKTSREYQVIE
SIAENTPGVLLLTATPEQLGHESHFARLRLLDPDRFYDYQAFVEEEKQYAPVADAVSQLL
SDEKLSNEAKNSITELLSEQDVEPLLRIIEASDIDEEQRRDARNELIDNLMDRHGTGRVL
FRNTRAAIQGFPQRHLNLHPLALPNQYQTAMRVAAMMGGSKQSLEQKAIQWLYPEDIYQQ
FEGESASWWGFDPRIDWLLSLLKSNRQEKVLVICSRAQTALSLEQALREREGIRGTVFHE
GMSILERDKAAAYFAQEEAGAQVLICSEIGSEGRNFQFANQLVMFDLPMNPDLLEQRIGR
LDRIGQRRDIEIHVPYMEGTSQALLARWYNEGLNAFEETCPTGRAVFEHVQEELLQLLAK
GSLDDSLDSLIETSAEMHHRLKAELEKGRDRLLEMHSNGGEQAKALADTIRTHDGDTNLV
TFALGLFDTIGLNQDDKGENAIVVTPSEHMLVSSYPGLSSEGCTITFDRETALSREDLHF
ISWEHPMIQGGIDLLLSEDVGTTAVSLLKNKALPVGTLFLELLYVADAQAPKSSGIHQFL
PATPIRVLLDAKGNDLAAQVEFENFHRQLSPVNRHLASKLVSSVQKQIHGLIEMGDPLAE
KQLAVIKEAAEAEMTSKLRAELDRLQALKAVNPNIRDDELEAIETQMDELRGYINQAQVN
LDALRVIVVSHQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgccctcggacaacgttggatcagcgatactgaaagtgacctgggtctgggt
accgttgttgcgattgatgcgcgcaccgtgaccctgatgttcccggccagtgaagaaaac
cggctctacgcctgtaacgatgcgcctattacccgtgtcatgtttaacgttggcgatact
gtcgaaagtcatgaaggctggtttctcaccgttgaacgtgtcgacgaagataagggcgta
ttgacctatgtcggtacccgtactgacaccggcgaaggaaatgtgtcgttgcgcgagatt
ttccttagtcaccaaatccgctttaaccgcccacaggataagctgtttgccggccaaatc
gaccgtatggaccgcttcgcccttcgctatcgcgcactgaaaaaccagtacgagcaacac
aaaagtccactgcgtggcctttgcggcatgcgtgctggccttatccctcaccagctattt
atcgcccatgaagtgggccgccgtcatgcaccgcgcgtgttattggccgacgaagtgggc
ctgggtaagaccattgaggctggcatgatcatccaccaacaggtattgtctggccgtgcg
tcccgtatcctggtggtggtgccagaaaccctgcaacaccagtggctggttgaaatgctt
cgccgtttcaatctgcatttttccatttttgacgaagagcgttgtattgaagcgtttgcc
gatgccgacaacccgtttgatactgcgcaactggtgctgtgttcactggatttcctgcgt
aaaagccgcaagcgtgccgaacaagcggcggaaggtgactgggatttattggtggtagat
gaagcgcaccatctggagtggagtgaagaaaaaaccagccgcgaatatcaggtaattgaa
agcattgccgaaaacaccccgggcgtactgctactaacagcgacgcctgaacaactgggc
catgaaagccactttgcccgcctgcgtctgctggatccggaccgtttctacgactaccag
gcgtttgtcgaggaagaaaaacagtatgccccggtggcagatgctgtcagccagctattg
tcagatgaaaaactcagtaacgaggccaaaaacagtatcacggagttgttgtctgagcag
gacgtggaaccactgctacgcattattgaagccagcgacatcgatgaagagcagcgccgt
gatgcccgtaatgaactgattgataacctgatggaccgtcatggtacaggtcgcgtgttg
tttcgcaacacccgcgcagccattcagggcttcccacagcgccacctgaatctgcatcca
ctggcattgccaaaccaataccagaccgccatgcgtgttgcggccatgatgggcggcagc
aagcaatcgctggaacaaaaagccatccagtggctgtaccccgaagatatttaccagcaa
tttgaaggcgaaagcgccagctggtggggctttgacccacgcatcgactggctgctgagc
ctgcttaagtcaaaccgccaggaaaaagtactggtgatctgctcccgcgcacaaactgcc
ctgtcactggaacaggcactgcgcgagcgtgagggcatccgcggcacggtgttccacgag
gggatgtcgattctggagcgcgacaaggctgcggcatactttgcccaggaagaagccggt
gctcaggtactgatctgctcggaaatcggttccgaaggccgtaacttccagttcgccaac
cagttggtgatgttcgacctgccaatgaacccggacctgctggaacaacgtatcggccgc
cttgaccgtatcggccagcgtcgcgatattgaaatccatgtcccttacatggaaggcacc
tcgcaggcacttctggcgcgctggtacaacgaaggcctgaacgcgtttgaagagacctgc
ccgactggccgcgccgtgtttgaacatgttcaggaagaattgttgcaactgctggccaaa
ggcagtctggacgattcgctggattccctgattgaaaccagtgcagagatgcaccacagg
ctgaaagcagagctggaaaaaggccgtgaccgcctgctggagatgcactccaacggcggc
gagcaggccaaggcactggcagacacgatccgtacacacgatggtgacactaacctggtg
acgtttgcactgggcctgtttgataccataggtctaaatcaggatgacaagggcgaaaat
gctatcgtcgtgacaccgtctgagcacatgctggtctccagttatccggggctgtcaagc
gaaggctgcaccatcacgttcgaccgcgaaacggcactgtctcgtgaagatctgcacttt
atcagctgggagcacccgatgatccaggggggtatcgatctgctgctatcagaagatgtc
ggtaccacagccgtctccctgctgaaaaacaaagccctgcctgtgggcactctattcctg
gagctgttgtatgtggcagatgcgcaggcaccgaaaagctcaggcattcatcagttcctg
ccagcaaccccaatccgtgtattgctggatgccaaagggaacgatctggcggcgcaggtg
gaattcgaaaatttccaccgtcagttgagcccggttaaccgccatctggcgagcaagctg
gtgtcttcggtacaaaaacagatccatggcctgattgagatgggtgacccgctggcggaa
aaacaactggccgttatcaaagaagcggcggaagcggaaatgacgtcgaagctgcgcgcc
gaactggatcgcctgcaggcccttaaggccgtaaacccgaacatccgcgacgatgaactg
gaagcgattgaaacccagatggatgaacttcgcggctacatcaaccaggcacaggtcaat
ctggatgcgcttcgcgtgattgtggtcagccaccagtaa
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