Grimontia hollisae: AL542_12375
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Entry
AL542_12375 CDS
T04260
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
gho
Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gho03009
]
AL542_12375
Enzymes [BR:
gho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL542_12375
Ribosome biogenesis [BR:
gho03009
]
Prokaryotic type
rRNA helicases
AL542_12375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMG31070
LinkDB
All DBs
Position
1:complement(1858747..1859988)
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AA seq
413 aa
AA seq
DB search
MRTFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL
LQHLIDFPRQKPGPARALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQEHAEI
LGKTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSECRWRK
QSMLFSATLEGRGIEGFKKTLLTDPVEVEAEPPRRERKKITQWYYRCDDMTHKNALLKSI
LTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEINVLL
ATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMMDRI
CRYMKEDVKERFIDGLKPKHKKPEFKKKKKKRPNKVAKGKAKKATKKAAKKST
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaacttttgctgaactggaactggatcctcaactgctacaagcgctggatgacatg
ggcttcgagcgaccaacagcaatccaggctggcgtgatccctcatggtatggatggccgt
gatattctggcctccgcgccaacgggaacagggaaaacagcagcctttgtgttgccactg
ctgcaacaccttatcgactttccccgccagaagccgggtcctgcacgcgcactgatcctg
acaccaacccgcgagctggctattcagatagcagatcaggctcgcgcactggcgaaatac
accggtctaaaaatcatcactatcaccggcggtatctcttaccaggagcacgcagaaatt
ctgggtaaaacccaggacatcgtagtggctaccccgggccgcctgatggagtacgtggaa
gcggagcgttttgactgccgcgcgattgaaagcctggtactggatgaggccgaccggatg
ctggacatggggtttggcccagccgttgatcgcctctccagcgaatgtcgttggcgtaag
caaagcatgttgttctcagcaacgctggaaggtcgtggcattgaaggcttcaaaaagacc
ctgctcaccgatccagtcgaagtggaagcggagccaccacgccgcgagcgcaaaaaaatc
acccagtggtattaccgctgtgatgacatgacacataaaaatgccctactgaagtctatc
ctgaccgaacaggcaaaacgcgccattattttcgtgaaaacccgagagcgtctggcggca
ctgcgcgagtacctgaccgcagaaaaaataaaatgtgcctggttgcaaggcgaaatgcca
caggcaaaacggacgtacgcgattgaacgtttcacccgcggtgaaatcaatgtgttgctg
gccacagacgtagcggcacgtggcatcgacgtgccggacatcgaccacgtgatcaacttt
gacctgccccgcaaagcagacgtctatctccaccgtattggccgcactgcccgcgccggt
aaaaaggggaatgcgatttcactggtagaagcacacgaccaaccgatgatggatcgtatc
tgccgctacatgaaagaagacgtgaaagaacgctttattgatggactaaaacccaaacat
aaaaagccagagtttaagaagaaaaagaaaaagcgtcctaacaaagtcgccaaaggcaaa
gccaagaaagcgacgaaaaaagcagcaaagaaatccacttag
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