Gaoshiqia hydrogeniformans: ACOIT5_03140
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Entry
ACOIT5_03140 CDS
T11085
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACOIT5_03140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghy03021
]
ACOIT5_03140 (rpoC)
03400 DNA repair and recombination proteins [BR:
ghy03400
]
ACOIT5_03140 (rpoC)
Enzymes [BR:
ghy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACOIT5_03140 (rpoC)
Transcription machinery [BR:
ghy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACOIT5_03140 (rpoC)
DNA repair and recombination proteins [BR:
ghy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACOIT5_03140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ParM_N
Motif
Other DBs
NCBI-ProteinID:
XQW73802
LinkDB
All DBs
Position
complement(753575..757852)
Genome browser
AA seq
1425 aa
AA seq
DB search
MAFRKDNKVKSSFTKIAISLASPEEVLEHSHGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQAGVKAQEGVKKLDFLTEEEYLDILDTLPKENQHLDD
DDPNKFIAKMGAEALYMLLERIELDELSYDLRHKAGTETSQQRKSEALKRLNVVEAFRAS
KNINRPEWMIVKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKTENNRALKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPTLKLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKDPVV
WDILENVLKGHPVMLNRAPTLHRLSIQAFQPVLIEGKAIQLHPLVCTGFNADFDGDQMAV
HVPLGNAAILEAQLLMLASQNLLNPANGAPITVPSQDMVLGLYYMTKHRAGARGEGMTFY
SPEEVIIAYNEGKIDMHAIVKVKVDDVDDHGEVLKHIIETTVGRVIFNQVVPRKVGYINE
LLTKKSLRNIISDIFKTVGNATTVRFLDDIKDLGYKMAYRGGLSFNLSDVIVPVDKREIV
EVGYEEVEEVMNNYNMGFITNNERYNQVIDIWTHANAKLTNSVMKTISTDKQGFNSVYMM
LDSGARGSKEQIRQLCGMRGLMAKPQKSGSTGSQIIENPILANFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVAQDVIISDEDCGTLRGLVAFAIKNNEEVVASLFERI
IGRTTVHDIFHPLTGELIVRTGDLITEEIAKQIEDSPIESVEIRSVLTCEAKVGVCSKCY
GRNLATANLARRGEAVGVIAAQSIGEPGTQLTLRTFHVGGIAGNISSQSMVESRYDGIAE
IEELRKVDSVDETGKKVSVVVGRLAELRIIDKNTRIPLSTHTIPYGSKLFIENGQEVSKG
QRICEWDPYNGVIITEYNGKISFENLIDGITFREESDEQTGYKEKVIIETRDKTKNPSLR
ILDEQGEVIRSYNLPVGGHISVDEAELVNAGQVLVKIPRASGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEISLGKIKRGNREIIVTSKGGDVKKYLVPLSKQILVQENDYIKAGT
PLSDGAITPSDILAIKGPTAVQEYILNEVQDVYRMQGVKINDKHFEVIIRQMMRKVEIDD
PGDTRFLEKQVVDKNEFLHENDWIYNKKVVIEPGDSELRAGMIITARRLRDENSVLRRRD
KKLVDARDAIPATSSQVLQGITRAALQTRSWLSAASFQETTKVLNEAAIQGKVDYLDGLK
ENVICGHLIPAGTGLKEYKNLVVGSREEYDRMMEVKETENVGRED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagacaataaagttaagagcagttttaccaaaatagcgattagtctt
gcttctcccgaagaagtgcttgaacattcccatggtgaagttttaaagcctgaaacaatc
aactacagaacgtataaaccggaacgtgacggtttgttctgtgaacggatcttcgggcct
gtaaaagattatgaatgtcattgcggaaaatacaagcgtattcgctacaagggaattgtt
tgtgaccgttgcggtgttgaagtaaccgaaaagaaagtccgtcgcgaacggatgggacat
atttccctggtggttccggtggcgcacatttggtatttcaagtcgcttccgaataaaatc
ggctacttgctcggtttaccgaccaagaaactcgacagtattatttattacgaacggtat
gtggttatccaggccggtgtaaaagctcaggaaggggtaaaaaaacttgatttcctgacg
gaagaagagtacctggatattttggatacgcttccgaaagaaaaccagcatctggatgat
gatgaccccaataagtttattgcaaaaatgggagccgaagcgctttacatgttgttggag
cgcatcgaactggatgaactttcgtatgatttacgtcacaaagcaggaacagaaacttcg
caacagcggaaaagcgaagccctaaaaaggttgaatgttgttgaagcgttccgcgcaagt
aaaaatatcaaccgtcccgaatggatgattgtgaaagttgttccggttattccgcccgat
ttacgtcctttagtgccactggatggcgggcgttttgccacatccgacctgaacgacctt
tatcggcgggtgattatccgcaacaaccggttgaaacgattgatcgagatcaaagctccc
gaggtgatcctccgtaacgaaaagaggatgttgcaggaagcagtcgactcgttatttgat
aattcacggaaatccaatgccgtaaaaacggaaaacaaccgcgccctgaaatcactgtcc
gacagtttgaaaggaaagcaaggccgtttccgtcaaaacctgcttggtaaacgtgttgac
tattctgcccgttccgtaatcgtggttggcccgacgctcaaattgcatgaatgcggcctt
ccgaaagatatggcggcagagctttacaaacccttcattattcggaaactgattgaaagg
ggaatagtaaaaaccgtaaaatcggccaaaaagattgttgatcgtaaagatccggtggtc
tgggatattcttgaaaatgtattgaaggggcatcccgtgatgctgaaccgtgcgccgact
ttgcaccggctttccattcaggcctttcagcctgtattgatcgaagggaaggccattcag
ttgcacccgctggtttgtaccggttttaacgccgactttgacggcgaccaaatggccgtg
catgtgccgctaggcaacgccgccatactggaggcccagttgctgatgctggcatcgcaa
aacctgttgaacccggctaacggcgcgccgattaccgttccttcgcaggacatggttctt
ggattgtattacatgaccaaacaccgtgctggtgcccggggcgaaggtatgaccttctat
tcgcccgaagaagtaatcattgcctataatgaaggcaagattgatatgcatgccatcgtc
aaggtaaaagtggatgatgttgacgatcacggtgaagtactgaaacacattattgagaca
acagtcggtcgtgtcatcttcaaccaggtggtgccgcgtaaagtgggctacatcaacgaa
ttgttgacgaagaaatcgttgagaaatattatttctgatatcttcaaaacagtcggtaac
gcgacaacagtacgtttcctcgacgatatcaaagatctgggatacaaaatggcctaccgt
ggaggtttgtcgtttaacctgagcgatgtgatcgttcctgttgataagcgtgaaattgtt
gaagttggttacgaggaggtggaagaagtgatgaataactataatatgggtttcatcacg
aataatgaacgctacaaccaggtgatcgatatctggacacatgccaacgccaagttgacc
aattcggtaatgaaaaccatcagtaccgacaagcaagggtttaactcggtgtacatgatg
cttgactcaggcgcccgtggttccaaagagcagattcgtcagctttgcggaatgagggga
ttgatggcaaaacctcaaaaatctggttctaccggttcgcagattatcgaaaacccgatt
ttggcgaactttaaagaaggtttgtctgttttggaatactttatttccactcacggcgcc
cgtaaagggttggcagataccgcactgaaaacagccgacgcgggttacctgacccgtcgt
ttggtggatgttgcccaggatgtaatcatctcggacgaggattgcggaaccttgcgcggt
ttggtcgcttttgcgatcaaaaacaacgaggaagtggtagcctccctgttcgaacggatc
attggccgtacaacggtacacgatattttccatccgcttaccggcgagttaatcgtacgt
accggcgatctgattaccgaagaaattgccaaacagatcgaagactctccgattgagagt
gtggagattcgttcggtattaacctgcgaagctaaagttggcgtatgcagcaaatgttat
gggcgtaacctggctaccgcgaatctcgcacgccggggtgaggctgttggcgttatcgcg
gcacaatcgatcggtgagccgggtacccagctgaccttgcgtacattccacgtgggtggt
attgccggtaacatttcgtctcaatcaatggttgagtcgcgttacgacggtattgcagag
attgaagagttgcgtaaggtcgattcggtcgacgaaacagggaaaaaagtgtctgttgtt
gttggtcgtttggccgagttgcgtattatcgacaaaaatacccgcatccccttgtctact
cataccattccgtatggttcgaaactgtttatcgaaaatgggcaggaagtatcgaaagga
caacggatttgcgagtgggacccctataacggtgttattattaccgaatacaacggtaaa
atttcatttgagaacctgatcgacggtattaccttccgggaagaatcagatgaacaaacc
ggttacaaagaaaaagtgatcatcgaaacccgtgataaaaccaaaaacccctctttgcgg
attttggacgaacagggtgaagtgatccgttcgtacaacttacccgtaggcgggcacatt
tcggttgatgaagctgaattggtaaacgcagggcaggtgttggttaaaataccccgtgct
tcgggtaaagcaggcgatatcaccggtggtcttccccgtgtgaccgaattgtttgaagcc
cgtaacccgtcgaacccggctgttgtttcggagattgacggcgaaatttcactgggtaaa
attaaacgtggtaaccgcgagattatcgtgacctctaagggcggcgatgtgaaaaaatac
ctggtgcccctgtcaaaacagattctggtccaggaaaacgactacatcaaagcaggtact
cccttgtccgacggcgcgattacaccttcagacatcctggccattaaagggccaacggct
gtgcaggaatatattctgaatgaagttcaggatgtgtaccggatgcaaggtgtaaaaatc
aacgacaagcactttgaggtgattattcgtcaaatgatgcggaaagttgaaattgacgat
ccgggcgatacccgcttcctggaaaaacaggtggtcgacaaaaacgaattcctgcacgaa
aatgactggatctacaataaaaaagtggtgatagaaccaggtgactcggaacttcgtgcc
ggtatgatcatcactgcgcgtcgtttacgtgacgaaaattccgtcttgcgtcgtcgtgat
aaaaaactggtagatgcccgcgatgccatccccgcaacctcgagccaggtactgcagggg
atcaccagggctgctctgcagacccgtagctggttgtcggctgcatcattccaggaaaca
actaaagtgctgaacgaagctgcgatccagggtaaagtggattacctggacggattgaag
gaaaacgttatttgcggacacctgattccggccggtactggtttaaaagaatacaaaaac
ctggtggtcggttcgcgtgaagaatacgaccgtatgatggaagttaaagaaactgaaaac
gtaggccgcgaggattaa
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integrated database retrieval system
