Gaoshiqia hydrogeniformans: ACOIT5_03240
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Entry
ACOIT5_03240 CDS
T11085
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACOIT5_03240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghy03021
]
ACOIT5_03240
Transcription machinery [BR:
ghy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACOIT5_03240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_ECF
Sigma70_r2
Sigma70_r4
HTH_24
GerE
HTH_5
HTH_11
HTH_23
PF0610-like_N
HTH_AsnC-type
HTH_40
MarR
DUF7646
HTH_10
RNase_R_N
DUF8266
DUF2774
IbrB_C
Hydrolase_3
HTH_ParB
ATP-grasp_4
MSC
MarR_2
DUF3489
HTH_20
Orange_N
HTH_Tnp_ISL3
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
XQW73816
LinkDB
All DBs
Position
773427..774023
Genome browser
AA seq
198 aa
AA seq
DB search
MTEKVSSEELFILQRMIEGDEDAFKYFFDTYYDDLCNFVNAYLRNETLSEDIVQTIFIYL
WEKKGSLTFNCSVKSYLYSASKNKSLNYLRNQKTKTRIVNALIPNHELNQSEPTDQFVEF
EELKQIIGNAIDGLPPQCKIIYQLSRDEGLTNKEIAEKLGITAKTVENQMTIALKKIRDF
LQAYRDQIFMLFLMATFF
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaggtatcaagcgaagaattattcattttacaaagaatgattgaaggagat
gaagacgccttcaaatatttttttgatacttactacgacgacctgtgtaatttcgtcaat
gcctatctgcggaacgaaacactttctgaggatatcgttcaaacgatttttatttacctg
tgggaaaagaaaggttcgcttacattcaattgttccgtgaaatcatacctgtactccgct
tcaaaaaataaaagtctgaactatttacgaaaccagaaaacgaaaacccgcatcgtaaac
gcgctgatcccgaaccatgagttaaatcagtctgaaccaaccgaccagtttgtggaattt
gaagaactaaaacagatcatcggcaatgcgattgacggattaccccctcaatgcaaaata
atctatcaactaagccgggacgaaggactgaccaacaaagagattgctgaaaagctcggc
attacggcaaaaacagtcgaaaaccaaatgaccattgccctaaaaaagatacgggatttt
ttacaggcttaccgcgaccaaattttcatgctgttccttatggcaacttttttctga
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