Gaoshiqia hydrogeniformans: ACOIT5_07895
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Entry
ACOIT5_07895 CDS
T11085
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACOIT5_07895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghy03400
]
ACOIT5_07895 (mfd)
Enzymes [BR:
ghy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACOIT5_07895 (mfd)
DNA repair and recombination proteins [BR:
ghy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACOIT5_07895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XQW74726
LinkDB
All DBs
Position
1961624..1964950
Genome browser
AA seq
1108 aa
AA seq
DB search
MELKEFRRLFEKSEAIQRILGQTNTPGEKFHLKGLIGSSQSLLASVMAERLKQPVVFIMN
DREEAAYLYDDLNNLQTDATVLFFPGSYKRSVQYEQLEQENIILRTEVLTRLHDGKPVCI
STYPEALAEKVITGEALASNSFQVRKGDKLSIDFLNDVLFEYGFERVDFAVEPGQYAIRG
SLVDIYSFANEDPYRLDFFGDEVDSIRSFDIDTQISRQKLDRIVIIPNIQSGLDEERRDN
FLNFLTPESIVVARDVKLVADLIEGIYQQVVRSDGQDEETRSRLIPGGEFLSSLGRLTCL
ETGNTTYFKTKHIFEFNTSPQPAFNKNFELLAQNLKDNLAAGYQVFILSANEKQVERLQA
IFDDKSLNVPFTALSFALNDGFIDHDLKLCCYTDHQIFERYHRFQVKSRKEQKESISLKE
LNKLHTGDYVVHIDHGIGRFAGLVKTEVNGKIQEAIRLTYKDNDVLLVSIHSLHRISKYK
GKDGLEPNINKLGSGAWQKLKDRTKSKVKDIARDLIALYARRRQEKGFAFSPDSYLQTEL
EASFIFEDTPDQMKTTQAVKEDMERLIPMDRLVCGDVGFGKTEIAIRAAFKAVADSKQVA
VLVPTTILALQHYKTFKDRLADFPAKIEYVSRLRPAGDVKNILKEAAAGKIDILIGTHRL
IGKDVKFKDLGLLIVDEEQKFGVSVKEKLKQLKLNVDTLTLTATPIPRTLQFSLMGARDL
SIIQTPPPNRYPIITELHGFNKEIIREAILHEVGRNGQVFFIHNRVQNIYEVEQVIQRIV
PGVKTVVAHGQMEGPKLEKIMLGFINGDFDVLIATTIIESGLDIPNANTIIINHAENFGL
SDLHQLRGRVGRSNKKAFCYLLAPPLSLVSPEARRRLQAIEEFSDLGSGFNIAMRDLDIR
GAGNLLGAEQSGFIADIGYETYHRILNEAIQELKHDEYKELFEEEKEEAGKAFLKGGFVH
DCQIDTDMELLFPDSYIQSISERMLLYRELDSMENEESLQHYQAGLLDRFGPLPGQSREL
LEVVRLRWLAIELGMERIILKNKKMFCYFISDQQSAYYQSETFTRVLQYVQQHPNSCRMK
EKQDKLRLSFEPVESVAAAKALLENVNQ
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
ttggagttgaaagaatttcggcgcttgttcgaaaaaagcgaagctattcagcgcatttta
ggccagacgaataccccgggtgaaaaatttcacctgaaggggcttattggctcgtctcaa
agtttgttggcatccgttatggccgaaaggctgaaacaaccggtcgttttcatcatgaat
gaccgggaagaagccgcctacctgtacgacgatctgaataacctgcaaaccgacgcaacg
gtcctctttttccccggttcatataaacgttcagttcagtacgaacagcttgagcaggaa
aatattattctccgaaccgaggtactgaccaggttgcacgacggtaagccggtctgtatt
tccacttatcccgaagccctggctgagaaggtgatcaccggggaagccctggcttccaat
agttttcaagtacgcaaaggtgacaaattgtctatcgattttctgaacgatgtgttgttc
gaatacggttttgagcgcgtcgactttgccgttgaacccgggcagtacgccattcgtggc
agtctggtcgatatttattcttttgcaaatgaagatccgtatcgccttgatttctttggc
gacgaagttgactccatccgaagctttgatatcgacacgcagatttcacgccaaaagctc
gatagaattgtaatcattccgaacatccagagcgggttggatgaggaacgccgggacaat
ttcctgaattttctgacgcctgaaagtatcgttgtcgcccgcgatgttaaactggttgcc
gacctgatagaagggatttaccagcaagttgtccgttcggatggtcaggatgaagaaacc
aggagcaggctgatcccgggcggcgaatttttaagttcgctcgggcggcttacttgtctg
gaaaccggaaataccacttactttaagacgaagcatatttttgagttcaatacatcaccg
caaccggcattcaataaaaactttgaactgttggctcaaaacctgaaagataacctggcc
gccggctaccaggtctttattctttcggccaacgaaaaacaagtagagcggcttcaggcc
attttcgacgataaaagcctgaatgtgccatttaccgccctgtcttttgccctgaacgac
gggtttatcgaccacgacctgaaactgtgttgttataccgaccaccagatttttgaacgt
tatcaccggtttcaggtgaaaagccggaaagaacagaaagaaagtatcagcctgaaggaa
ctgaataaacttcatacgggcgactacgtggtacacatcgaccacgggattggtcggttt
gccgggttggtaaaaaccgaagtcaacgggaaaattcaggaagccatccggcttacctat
aaggacaacgacgtgttactggtgagtatccactcgctgcaccggatttcgaaatataag
ggaaaagacgggctggagcccaacatcaataaattaggaagcggtgcctggcaaaagctg
aaagaccggaccaagagtaaggtgaaagatattgcccgcgacctgattgccctgtatgcc
cgacgcaggcaggaaaagggctttgctttttctcccgattcttaccttcagaccgagttg
gaagcttcgttcatttttgaagatacgcccgaccagatgaaaaccactcaggcggtgaaa
gaggatatggaacgcctgatcccgatggaccgcctggtttgcggcgacgtgggctttggg
aagacagaaatagccatccgcgcggcatttaaggctgtagccgacagcaaacaggtggcc
gtgctggtaccgactaccatcctggcccttcagcattataaaacatttaaagaccgttta
gccgattttccggcaaaaattgaatacgtcagtcgtttacgtccggccggcgatgtgaaa
aatattttaaaagaagcggctgccggaaagattgatatcctgattggcacgcaccgacta
atcgggaaagatgtgaaatttaaagatctgggtctgctgattgtggacgaggagcagaag
ttcggcgtttcggtgaaggaaaagctgaagcagctgaagctgaatgtcgatacacttacc
ctgacagcaacgccgatcccgcgcaccttgcaattttcgctgatgggcgcccgcgacttg
tcgatcattcaaacgcctccgcccaaccgttacccgattattaccgagctgcacggcttt
aacaaagagattatccgcgaagccattctccacgaagtgggccgtaacgggcaggtattt
tttattcataaccgggtacagaatatttacgaagtagagcaagtaattcagcggattgtg
cccggggtgaaaaccgtggttgcccacgggcaaatggaaggaccgaagctggagaaaatt
atgctcggctttattaacggcgactttgatgtactgatcgcgaccaccatcattgaatcg
ggactggatattccgaatgccaataccatcatcatcaaccatgccgagaactttggactg
agcgatttacaccagttgcggggcagggtagggcgttccaataaaaaggccttttgttac
ctgttggcgcctcctttgtcgctggtaagccccgaagcccggcgccgcctgcaggccatc
gaagaattttcggacctgggcagcggttttaacattgccatgcgcgacctggatatccgg
ggagcgggcaacctgctgggagccgaacaaagcggtttcattgccgatatcggctacgaa
acctaccaccgtatcttgaacgaagcgattcaggaactgaaacacgacgagtataaagag
ttgtttgaagaagaaaaagaagaagccgggaaagccttcctgaagggtggttttgttcac
gactgccagattgataccgatatggaactgcttttccccgacagctatatccaaagtatt
tcggaacggatgctattgtaccgcgagctggacagcatggaaaacgaagaaagcctgcaa
cattaccaggccggcttgctcgatcgttttggccctttacccgggcagagccgcgaattg
ctcgaagtggtccgcctgcgctggttggccatcgagctgggtatggaacgcatcatcctg
aaaaacaaaaaaatgttctgctattttatttccgaccagcagtcggcttactaccagtcg
gaaacctttacccgggtattgcagtacgtgcagcaacacccgaacagctgccggatgaag
gagaaacaggataaactccgcttaagcttcgagccggtcgaatcggttgctgccgcgaag
gccttgctggagaatgtgaatcagtaa
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