KEGG   Gaoshiqia hydrogeniformans: ACOIT5_13545
Entry
ACOIT5_13545      CDS       T11085                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ghy  Gaoshiqia hydrogeniformans
Pathway
ghy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ghy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACOIT5_13545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghy03021]
    ACOIT5_13545
Transcription machinery [BR:ghy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACOIT5_13545
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 GerE Sigma70_ECF HTH_38 PF0610-like_N HTH_28 HTH_29 HTH_Tnp_ISL3 HTH_11 HTH_Tnp_4 DDB_G0268712_C HTH_24 TRM10_Arch_C MTBP_C NUC Trp_repressor Xre-like-HTH WHD_HELB SpoIIID UPF0122
Other DBs
NCBI-ProteinID: XQW71436
LinkDB
Position
3340499..3341056
AA seq 185 aa
MSVPDEKILINALKQSDKNAFDAIYYRCHKKLFAFSLKFLKDRDETEDLIQKVFTILWER
RLHLDENKSVEGYLFRIVRNEIYDILKLRAIRGHYSDYVVNSQEADLDELEKKKIIEQVF
QLVDHLPERRAQIFRMSKEEGLTYRQIAEILQISENTVDTQIRHSLDYLRKEMHKLRLII
LSILP
NT seq 558 nt   +upstreamnt  +downstreamnt
atgagcgtacccgatgagaagatcttgataaacgcattgaagcaaagtgacaagaatgca
tttgatgcaatctattacagatgtcacaaaaagctttttgctttctcattgaaatttctg
aaagaccgggacgaaacggaagatctgatccagaaagtgtttaccattttgtgggaacgc
cggttgcatctggatgaaaataagtcggttgaaggctatctttttcggatcgtgcggaac
gagatttacgatattttaaaacttcgggccatccgcgggcattacagcgattatgtggtt
aacagccaggaggcagatttagatgagctggaaaaaaagaagataattgagcaggttttt
cagttggttgatcatttgcctgagcggcgcgctcaaattttccggatgagtaaagaagaa
ggattaacttacaggcagattgccgaaattctgcagatctccgaaaatacggtggatacc
cagatccgccacagcctcgattatttaagaaaagaaatgcacaaactcaggctgatcatc
ctgagcattctcccctga

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