Gaoshiqia hydrogeniformans: ACOIT5_13750
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Entry
ACOIT5_13750 CDS
T11085
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOIT5_13750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghy03019
]
ACOIT5_13750
03009 Ribosome biogenesis [BR:
ghy03009
]
ACOIT5_13750
Enzymes [BR:
ghy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACOIT5_13750
Messenger RNA biogenesis [BR:
ghy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACOIT5_13750
Ribosome biogenesis [BR:
ghy03009
]
Prokaryotic type
rRNA helicases
ACOIT5_13750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XQW71477
LinkDB
All DBs
Position
3399307..3401016
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AA seq
569 aa
AA seq
DB search
MTFEETGLKPELLSAISEMGFEQPTPIQEKTIPHLINNSNDLVALAQTGTGKTAAFGLPL
LHNINVGTKAVQALVLCPTRELCLQITRDLEAFSKNIRGFKNIAVYGGADIGKQIRELRD
GGQIVVGTPGRVHDLIRRKVLDVSQIRWLVLDEADEMLTMGFKEEMDAILAETPAIKQTL
LFSATMPREIADMAAKYLHHPEEIAVGKRNSGAENVEHHYYVVQAKDKYATLKRVADNYP
NCYAIVFCRTRMETREVAEKFMADGYNADALHGDLSQAQRDQVMSRFRSRNLQMLVATDV
AARGLDVNDLSHVINYSLPDDPEVYIHRSGRTGRAGKSGISVSIVHMRETGKLRQIENVS
HKRFERKMVPGGEEICEVQLMHLIDKVVQVEVNDSRIDPYLPAIKEKFAGLGSEEILKRF
VSIEFNRFLSYYKNAPDLNIREKEQRGVEKRGSERGFERGGRVTFSRLFINAGKKQNLNA
SRLLGLINEHLRKKNIEIGKIDIQRKFSFFEIDSRFESELVKSINGSVIDGHALKVDRVT
GQDRPAAPWTKTKKSYTESGFKRKPSKQR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaaacgggcttgaagcccgaactgctcagcgccatttcagaaatgggc
tttgagcaacctacgcctatccaggaaaaaacaatcccgcatttgatcaacaacagtaac
gacctggtagctttggcgcagacagggaccggtaaaactgccgcctttggtttgccgttg
ctgcataatatcaatgtaggcaccaaagctgtccaggccttggtgttgtgtcctacccgt
gaattatgtctgcaaatcacccgcgatctggaggctttctctaagaatatcaggggattc
aaaaacattgctgtttacgggggagctgatattggcaagcaaatccgtgaattgcgcgac
ggaggacaaattgtagtgggcaccccgggacgggtacacgacctgatccgcaggaaagtg
ctcgatgtaagccagatcagatggctggtgctcgacgaagccgacgagatgctcaccatg
ggtttcaaggaggaaatggatgctattttggctgaaactcctgcaatcaaacaaaccctg
ttgttttcggccaccatgccgcgcgaaattgccgacatggccgccaaatacctgcatcac
ccggaagaaattgccgtaggcaaacgcaactcaggcgccgagaatgtagaacatcactat
tatgtggtccaggccaaagataaatatgccaccttgaaacgggttgccgataactatccg
aattgctatgccattgtattttgccgtacccgcatggaaacccgcgaagtagccgaaaaa
tttatggccgacggttataatgccgatgctttgcacggagacctgtcgcaggctcagcgc
gaccaggtgatgagccgttttcgttcgcgtaacctgcaaatgctggtcgctaccgacgtg
gctgcgcgcggcttggatgtaaacgacctgagccatgtgatcaattacagcctgcccgac
gacccggaagtgtatatccaccggagcgggcggaccggacgtgccggaaaaagcggtatc
tcggtatcgattgtccacatgcgcgaaaccggtaaattgaggcagattgaaaatgtctca
cacaaacgctttgagcggaagatggtgccgggtggtgaagaaatttgcgaagtacagctg
atgcacctgattgacaaagtagtccaggtagaagtgaacgactcgcgcattgatccgtat
ttgccggcgattaaagagaaatttgccggactgggcagcgaagaaattttgaaacgtttt
gtttcgattgaatttaaccgcttcttatcctactataaaaatgctcccgatctgaatatt
cgcgagaaagaacagagaggcgttgaaaaacggggaagtgagcggggattcgaacgcggc
ggacgggtaaccttttcgcgtttgtttatcaatgccggtaaaaagcaaaacctgaatgct
tcccgcttgctggggctgatcaacgaacatttaagaaaaaagaacattgagattggtaaa
atcgatattcagcgtaaattctctttctttgaaattgacagtcgttttgaatcggagttg
gttaagtcgattaacggatcggtaattgacgggcatgccctgaaagttgaccgtgtaacc
ggacaggaccgcccggcagctccctggacaaagactaaaaaatcgtatactgaatcgggg
tttaaacgtaaaccgagcaaacaacgataa
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