Gaoshiqia hydrogeniformans: ACOIT5_15130
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Entry
ACOIT5_15130 CDS
T11085
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOIT5_15130 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghy03021
]
ACOIT5_15130 (rho)
03019 Messenger RNA biogenesis [BR:
ghy03019
]
ACOIT5_15130 (rho)
Transcription machinery [BR:
ghy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACOIT5_15130 (rho)
Messenger RNA biogenesis [BR:
ghy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACOIT5_15130 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
XQW71745
LinkDB
All DBs
Position
complement(3810526..3812292)
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AA seq
588 aa
AA seq
DB search
MYDIIELSRKLLPDLREIAKELKIRKVESYKKQDLIYKILDTQAILASERKSESSKEKMS
RPKQTPTPTPTQPDTQENKEKNLTEEASNNPEQPQKRRRTAVVIKAASAFDFTRRQREKE
REREAKAAQESAEEMKAEEEMKATEAEDIKEASTKPETAEKETQAEVRKDFQRDFSKDQK
PQQEQRKVKHPKWDNQQNPNKPKQGNGGNVAEKPYEFEGIITNTGVLEIMPDGYGFLRSS
DYNYLNSPDDIYVSQSQIKLFGLKTGDTITGTIRPPKEGEKYFPLIKVMEINGRTPDYIR
DRVPFDHLTPLFPNEKFNLTGKGHDNISTRVVDLFAPIGKGQRGLIVAQPKTGKTMLLKE
IANAIAANHPEVYMIVLLIDERPEEVTDMARSVNAEVISSTFDEPAERHVRVAGMVLEKA
KRLVECGHDVVILLDSITRLARAYNTVAPASGKVLSGGVDANALHKPKRFFGAARNIEEG
GSLTILSTALTETGSKMDDVIFEEFKGTGNMELQLDRKLSNKRIFPAVDIVSSSTRREDL
LLSKAMMDKVWILRNYLADMNSLEAMEFIKDRLMKTNSIEEFLISMNT
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatatcattgagttaagcagaaagttgcttcccgacttgcgggaaatagctaaa
gagcttaaaatcagaaaggttgaatcttacaagaaacaagatctgatttataaaatttta
gacacgcaggccattcttgcttctgagcgtaaatcggaaagctcgaaagaaaaaatgtcc
cggccaaaacaaactccaactccaactccaacacagccagatactcaggaaaataaagag
aagaatttgacggaagaagcgtcaaataatccggaacagcctcagaaacgccgccggaca
gctgttgtaattaaagctgccagcgcttttgatttcacccgaagacaacgggaaaaggag
agagagagagaggccaaagcggcccaggagagcgccgaagaaatgaaggccgaagaggaa
atgaaggcaaccgaagcagaagatattaaggaagcttcgaccaaaccggaaacggcagaa
aaagaaacacaggctgaagtcagaaaagactttcaacgcgatttttcaaaagatcagaaa
ccgcagcaagagcaacgtaaagtgaaacacccgaaatgggataatcagcaaaatcccaat
aaacccaaacagggtaacggtggaaatgtagctgaaaaaccatatgaatttgaaggaatt
atcaccaacaccggcgtactcgaaattatgcccgacggttacggttttttgcgttcttca
gactataattacctgaattcgccggacgatatttatgtgtcgcaatcgcaaattaaactg
ttcgggttgaaaaccggcgataccatcaccggcaccatccgcccgcccaaagaaggtgaa
aagtatttcccgctgatcaaagtgatggaaattaacggacgcactcccgattatattcgc
gaccgcgttccgttcgatcacctgactcctttgtttccgaatgaaaaatttaacctcacc
ggaaaaggtcatgataatatatcaacccgtgtcgttgatttgtttgccccgatcgggaaa
ggacagcgtggcttaattgtcgcccagcccaaaaccggtaaaaccatgttgctgaaggaa
attgcaaatgccattgcagccaaccatcctgaagtatatatgattgtgctgctgattgat
gaacgcccggaagaggtaactgatatggcacgcagcgtcaacgccgaagttatttcgtcc
acttttgacgaaccggcggaacgacacgtacgcgtagccggcatggtgctcgaaaaagcc
aaacgcctggttgaatgcggacatgatgtggtgatcctgcttgactccattacccgtttg
gcccgtgcatacaacacagtagcgccggcctcgggcaaagtgctttcgggtggtgttgac
gcaaacgccctgcacaagcccaaacgcttctttggagctgcccgtaatatcgaagaaggc
ggttcgctgaccattctttcaaccgcactgacagaaaccggttcaaaaatggatgacgtg
atctttgaagaattcaaaggaaccggtaacatggaacttcagctcgaccgaaaattatcc
aacaaacgtattttcccggccgtggatatcgtttcttcgagtacgcgtcgcgaagacctg
ctgctgtctaaggcgatgatggataaagtgtggatcctgagaaattacctggccgacatg
aactcgctggaggcgatggaatttatcaaagaccggttaatgaagaccaactcgattgaa
gaattcctgatttcgatgaatacttaa
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