KEGG   Gaoshiqia hydrogeniformans: ACOIT5_19910
Entry
ACOIT5_19910      CDS       T11085                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ghy  Gaoshiqia hydrogeniformans
Pathway
ghy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ghy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACOIT5_19910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghy03021]
    ACOIT5_19910
Transcription machinery [BR:ghy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACOIT5_19910
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 GerE Sigma70_ECF HTH_23 HTH_24 HTH_11 HTH_40 Xre-like-HTH HTH_10 HTH_5 Bac_DNA_binding HTH_28 NUMOD1 HU-CCDC81_bac_2 PhyR_sigma-like HTH_36 HTH_Mga HTH_17 PF0610-like_N
Other DBs
NCBI-ProteinID: XQW72680
LinkDB
Position
5010055..5010645
AA seq 196 aa
MESTRDTISLIKKGNQHAFQALVYRYSDELLVFSIGFVRVREVAEEIVSDAFVSLWKERE
RIFEIRDIKSYLYIIVRNASISHLRKMSGRKEITLENLEEFHTLPLTGPETDDITEEMLA
WINAAIDQLPPKCKAVFTLAKVQGLKYKEISEILGISVKTINNHIANALVHISQSLNQNK
KITGTDFGKIALFLFY
NT seq 591 nt   +upstreamnt  +downstreamnt
atggaatcaacccgtgacacgatctcattaattaaaaaaggcaatcagcatgcttttcag
gcccttgtataccgatattcagatgagcttctggtgttttctatcggttttgttcgtgtt
cgcgaagttgcagaagaaattgtcagcgatgcctttgtcagtttatggaaagaacgtgag
cgaattttcgagatccgggacatcaaatcatatctatacatcatcgttcggaatgccagt
atttcacatctcaggaaaatgagcggacgcaaagaaattaccctcgaaaatctggaagag
ttccatacattgccgctcaccggaccggaaaccgacgatatcacagaagagatgctggcc
tggataaatgcagctatcgaccaactccctcctaaatgcaaagccgtatttacactggca
aaagtacagggattgaaatacaaagaaatttcggagattctgggcatttctgttaaaacg
attaataatcacattgccaatgcattggtgcatatttctcaatccttgaatcaaaacaaa
aaaatcacaggcactgatttcggcaaaatcgctctatttctattctattga

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