Geobacillus icigianus: ACPVTF_06000
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Entry
ACPVTF_06000 CDS
T11292
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gic Geobacillus icigianus
Pathway
gic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPVTF_06000 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gic03019
]
ACPVTF_06000 (rnjA)
Messenger RNA biogenesis [BR:
gic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACPVTF_06000 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
XRN34143
LinkDB
All DBs
Position
complement(1175851..1177518)
Genome browser
AA seq
555 aa
AA seq
DB search
MKLLTDEQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHADKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLMSDSTNSEIPHFTMSERRVGESIHDIFRKVEGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPAHRVTILCTGS
QGEPMAALSRIASGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDKEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLINEAQALIAKHLAKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaactattgacagacgaacaagttggcgtttttgccctcggcggactgggtgaaatc
ggcaaaaatacatacggcgtacaattccaagatgaaattatcgtgattgacgcgggcatc
aagtttccggaagatgagttgctcggcatcgattacgtcattcccgactattcgtattta
gtaaagcatgccgacaaggtgaaagggctgttcatcacccacgggcacgaagaccacatt
ggcggcattccgtacttgctccggcaggtgaacatcccgatttacggcggcaaactggcg
ctcgggctgattcgcaacaaattggaagagcacgggttgctgcgccaagcaaagcttatt
gaaattcgcgaagacgatgtcatccgctttcaaaaaacggccgttacctttttccggacg
acacacagcattccggacagctacggcatcgtcgtcaaaacgccggttggccaaatcgtc
cataccggagatttcaaattcgactttactcccgttggcgagccggccaacttgacaaaa
atggccgaaatcgggaaagaaggcgtcctttgcctcatgtcggacagcacaaacagcgaa
attccgcattttacgatgtccgaacggcgcgtcggcgaaagcatccacgacatttttcgc
aaagtggaagggcgcatcattttcgccacttttgcttccaacatccatcggcttcaacaa
gtgacggaagcggctgtcgccaacaaccggaaaatcgccgtcttcggccgcagcatggaa
gcggccattgaaatcggacaagatctcggctacattaaatgcccgaaaggcacgttcgtc
gacgcgaacgaaatcaaccgcctgccagcgcatcgggtgacgattttgtgcaccggcagt
caaggggaaccgatggccgccttgtcgcgcatcgcgagcggcacgcaccggcaaattcaa
atcatcccgggcgacacggtcgtcttttcttcatcgccgatcccgggcaacaccgtgagc
gtcaaccgaacgatcaacatgctataccgagccggcgccgaagtgattcatgggccgctc
aacgatatccacacctccgggcacggcggacaagaagagcaaaagctgatgatccggttg
atgaagccgaaatatttcatgccgatccacggcgaataccggatgcaaaaaatgcacgcc
aagctcgccatcgactgcggcgtgccggaggaaaactgctttattatggacaacggcgaa
gtgctcggcatcagcgacaaagaagcgcgcatcgtcggcaaaattccgtccggttcggtc
tacatcgatggcagcggcgtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtcagaggaagggctcgtgatcgtcgtcgtcagcatcaacatgaaagactttaaaatc
gccgccggccctgatattatctctcgcggcttcgtctatatgcgcgaatcaggcgatttg
atcaacgaagcgcaggcgcttattgccaaacatctcgcgaaagtgctcgaacgaaaaacg
aaccaatggtcggaaattaaaaatgaaattaccgaaacgctcgccccgttcttgtacgag
cggacaaaacggcggccgatgattttgccgatcatcatggaaatctaa
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